New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5207123 =	45 (0.870)	4 (0.080)	4/250	NT	9.3%	coding (55/594 nt)	PP_4588	nitroreductase family oxidoreductase
	?	NC_002947	5207163 =	35 (0.710)					coding (95/594 nt)	PP_4588	nitroreductase family oxidoreductase

GAGGAAGCTCAGCAGGGTTTCTTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGC‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5207185‑5207123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagc‑gAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGG  >  NC_002947/5207163‑5207309                                                                                                                                                                                                                     GAGGAAGCTCAGCAGGGTTTCTTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGCGGTTGATGAACTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCG                                                                >  7:80109/1‑149                      TTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGC‑GAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAG                                          >  4:309107/1‑149                             ATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGC‑GAAGAAACCCTGCTGCGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTAT                                                                     >  3:82403/1‑115                             ATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGC‑GAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTAT                                                                     <  4:82403/115‑1                                                              C‑GAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGG  >  1:124916/1‑149                                                              C‑GAAGAAACACTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGCAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGAAACTGGG  >  1:313853/1‑149                                                                                                                                                                                                                     GAGGAAGCTCAGCAGGGTTTCTTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGC‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5207185‑5207123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagc‑gAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGG  >  NC_002947/5207163‑5207309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.