New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5207123 = | 45 (0.870) | 4 (0.080) | 4/250 | NT | 9.3% | coding (55/594 nt) | PP_4588 | nitroreductase family oxidoreductase |
? | NC_002947 | 5207163 = | 35 (0.710) | coding (95/594 nt) | PP_4588 | nitroreductase family oxidoreductase |
TCTAGAGCCTGGCCTTCGGCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGC > NC_002947/5206976‑5207270 | tCTAGAGCCTGGCCTTCGGCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGCTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑g > 3:220489/1‑149 (MQ=255) cccagtttcgattgaagggcaccagcaggctcaggtaacgctgccagttcggcgtgtcgcggcgggcataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagtgtttcttC‑g > 1:313853‑M1/148‑149 (MQ=255) cccagttgcgattgaagggcaccagcaggctcaggtaacgctcccagttcggcgtgtcgcggcgggcataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagggtttcttC‑g > 1:124916‑M1/148‑149 (MQ=255) gagCCTGGCCTTCGGCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCt < 6:22264/147‑1 (MQ=255) gCCTGGCCTTCGGCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTc < 1:281960/149‑1 (MQ=255) cTTCGGCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCAcgc > 8:143722/1‑149 (MQ=255) ggCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCt < 6:310381/149‑1 (MQ=255) aaaGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑Gc < 5:99467/130‑1 (MQ=255) aaaGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGACGATTACGCCATCAACGAGCAGTTCATCAACC‑Gc > 6:99467/1‑130 (MQ=255) acGCTTGTCAGTCGCTACGGCACGCAGTA‑GCGTTCTCTTTTCCCGTCAGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCATTTCATCATCC‑GCTGGTCGCCACGCGCCTTCACCgccgagc < 6:26847/148‑1 (MQ=255) cTTGTCAGTCGCGACGGCACGCAGTAGGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCgccgagcc > 1:172387/1‑148 (MQ=255) gTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGAt > 3:179497/1‑147 (MQ=255) tCATTCGCGACGGCAAGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTc < 7:287233/132‑1 (MQ=255) tCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAAGCCCCGCTTTTCCGATTACGCGATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGACGATCa < 5:235256/148‑1 (MQ=255) tCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAg < 7:143722/149‑1 (MQ=255) aGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGc < 1:292768/148‑1 (MQ=255) aGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGc < 8:187103/148‑1 (MQ=255) ctcccagttcggcgtgtcgcggcgggcataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagggtttcttC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaa > 4:309107‑M1/108‑149 (MQ=255) gcgACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaaga < 3:265130/149‑1 (MQ=255) gcgACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaag > 3:110991/1‑148 (MQ=255) cgACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaaga > 3:20291/1‑148 (MQ=255) cACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCct > 6:150116/1‑148 (MQ=255) aagCATTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATAACCGAGCAGTTCATCAACC‑GCTGGTCGCCACGCTCCTTCACATCCGAGCCGATCAGCGAAGAAACCctgc > 8:307580/3‑149 (MQ=255) gCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGAAGGAGCCGCCATTAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGAAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCctgct > 1:169100/1‑148 (MQ=255) gTA‑GCGTGCGCTTTTCCCGTCCGCTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGc < 4:220489/149‑1 (MQ=255) tGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACgcgc > 7:184256/1‑103 (MQ=255) tGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACgcgc < 8:184256/103‑1 (MQ=255) cgggcataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagttcatcaaCCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTc > 7:80109‑M1/86‑149 (MQ=255) gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGaa < 2:197790/149‑1 (MQ=255) gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGaa < 4:110991/149‑1 (MQ=255) gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGaa < 2:159598/149‑1 (MQ=255) ataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagggtttcttC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGAt < 4:82403‑M1/35‑1 (MQ=255) ataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagcgcagcagggtttcttC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGAt > 3:82403‑M1/81‑115 (MQ=255) tCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAgccgc > 5:223345/1‑149 (MQ=255) tCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAgccg < 4:179497/148‑1 (MQ=255) ccgtccgtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGccgccc > 3:79883/1‑149 (MQ=255) gtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCCCCGAGCCGATCAGCGAAGAAACCCTGCTGCGCTTCCTCGAAGCCGCCCGCTggc > 2:242417/1‑148 (MQ=255) gCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGAt > 4:187314/1‑101 (MQ=255) gCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGAt < 3:187314/101‑1 (MQ=255) gCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCAcc > 7:152139/1‑149 (MQ=255) gccgccATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGCTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc < 5:234690/149‑1 (MQ=255) gccgccATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc < 6:223345/149‑1 (MQ=255) ccgccATGATCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGcc < 5:150116/149‑1 (MQ=255) gcATGAGCGCCAACCCGCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCTCCACGCGCCTTCAGCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCtat < 2:169100/148‑1 (MQ=255) ccATGAGCGTCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCtat < 5:287599/149‑1 (MQ=255) cATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCta < 2:148919/147‑1 (MQ=255) cATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCta > 1:148919/1‑147 (MQ=255) cgcCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGc < 4:79883/149‑1 (MQ=255) cAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGc < 4:20291/149‑1 (MQ=255) ccccGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTCCTGAGCTTCCTCGAAGCCGCCCGCTCGGCACCTTCGGCCTATAACTCGCAGCCtag > 3:60776/1‑147 (MQ=255) cccGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTgg < 8:152139/149‑1 (MQ=255) gATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTa > 8:205356/1‑149 (MQ=255) gCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGc < 3:250282/104‑1 (MQ=255) gCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGc > 4:250282/1‑104 (MQ=255) atcaACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTg > 4:299175/1‑149 (MQ=255) tcaACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg > 6:116350/1‑149 (MQ=255) tcaACC‑GCTGGTCGCCAAGCGCCTTCACGGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGTGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg < 7:307580/149‑1 (MQ=255) caACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGa > 6:307367/1‑135 (MQ=255) caACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGa < 5:307367/135‑1 (MQ=255) cc‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGc < 2:172387/149‑1 (MQ=255) | TCTAGAGCCTGGCCTTCGGCAAAGCCAGACCGCTTGTCAGTCGCGACGGCACGCAGTA‑GCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGC > NC_002947/5206976‑5207270 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |