New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5207123 =	45 (0.870)	4 (0.080)	4/250	NT	9.3%	coding (55/594 nt)	PP_4588	nitroreductase family oxidoreductase
	?	NC_002947	5207163 =	35 (0.710)					coding (95/594 nt)	PP_4588	nitroreductase family oxidoreductase

TCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGG  >  NC_002947/5207016‑5207309                                                                                                                                                     |                                                                                                                                                   ctcccagttcggcgtgtcgcggcgggcataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagggtttcttC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaa                                                                                                                                                   >  4:309107‑M1/108‑149 (MQ=255)   gcgACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaaga                                                                                                                                                 <  3:265130/149‑1 (MQ=255)   gcgACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaag                                                                                                                                                  >  3:110991/1‑148 (MQ=255)    cgACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCgaaga                                                                                                                                                 >  3:20291/1‑148 (MQ=255)          cACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCct                                                                                                                                           >  6:150116/1‑148 (MQ=255)           aagCATTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATAACCGAGCAGTTCATCAACC‑GCTGGTCGCCACGCTCCTTCACATCCGAGCCGATCAGCGAAGAAACCctgc                                                                                                                                         >  8:307580/3‑149 (MQ=255)             gCAGTAGCGTGCGCTTTTCCCGTCCGTTCGAAGGAGCCGCCATTAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGAAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCctgct                                                                                                                                        >  1:169100/1‑148 (MQ=255)                gTAGCGTGCGCTTTTCCCGTCCGCTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGc                                                                                                                                    <  4:220489/149‑1 (MQ=255)                       cgggcataaaggaagcgccaaggctgcgagttataggccgaaggtgcccagcgggcggcttcgaggaagctcagcagttcatcaaCCGCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTc                                                                                                                              >  7:80109‑M1/86‑149 (MQ=255)                         gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGaa                                                                                                                           <  2:197790/149‑1 (MQ=255)                         gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGaa                                                                                                                           <  2:159598/149‑1 (MQ=255)                         gcTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGaa                                                                                                                           <  4:110991/149‑1 (MQ=255)                              tCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAgccgc                                                                                                                      >  5:223345/1‑149 (MQ=255)                              tCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAgccg                                                                                                                       <  4:179497/148‑1 (MQ=255)                                ccgtccgtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGccgccc                                                                                                                    >  3:79883/1‑149 (MQ=255)                                      gtTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCCCCGAGCCGATCAGCGAAGAAACCCTGCTGCGCTTCCTCGAAGCCGCCCGCTggc                                                                                                              >  2:242417/1‑148 (MQ=255)                                          gCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCAcc                                                                                                          >  7:152139/1‑149 (MQ=255)                                                gccgccATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGCTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc                                                                                                    <  5:234690/149‑1 (MQ=255)                                                gccgccATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGc                                                                                                    <  6:223345/149‑1 (MQ=255)                                                 ccgccATGATCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGcc                                                                                                   <  5:150116/149‑1 (MQ=255)                                                    gcATGAGCGCCAACCCGCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCTCCACGCGCCTTCAGCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCtat                                                                                                <  2:169100/148‑1 (MQ=255)                                                    ccATGAGCGTCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCtat                                                                                                <  5:287599/149‑1 (MQ=255)                                                     cATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCta                                                                                                 >  1:148919/1‑147 (MQ=255)                                                     cATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCta                                                                                                 <  2:148919/147‑1 (MQ=255)                                                           cgcCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGc                                                                                         <  4:79883/149‑1 (MQ=255)                                                              cAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGc                                                                                      <  4:20291/149‑1 (MQ=255)                                                                  ccccGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTCCTGAGCTTCCTCGAAGCCGCCCGCTCGGCACCTTCGGCCTATAACTCGCAGCCtag                                                                                  >  3:60776/1‑147 (MQ=255)                                                                   cccGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTgg                                                                                 <  8:152139/149‑1 (MQ=255)                                                                              gATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTa                                                                      >  8:205356/1‑149 (MQ=255)                                                                                    gCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGc                                                                                                             >  4:250282/1‑104 (MQ=255)                                                                                    gCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGc                                                                                                             <  3:250282/104‑1 (MQ=255)                                                                                     gaggaagctcagcagggtttcttcgctgatcggctcggcggtgaaggcgcgtggcgaccagcggTTGATGAACTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCccg                                                                >  7:80109‑M2/65‑149 (MQ=255)                                                                                                      atcaACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTg                                              >  4:299175/1‑149 (MQ=255)                                                                                                       tcaACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg                                             >  6:116350/1‑149 (MQ=255)                                                                                                       tcaACC‑GCTGGTCGCCAAGCGCCTTCACGGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGTGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTgg                                             <  7:307580/149‑1 (MQ=255)                                                                                                        caACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGa                                                          <  5:307367/135‑1 (MQ=255)                                                                                                        caACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGa                                                          >  6:307367/1‑135 (MQ=255)                                                                                                           ttcgctgatcggctcggcggtgaaggcgcgtggcgaccagcgAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAg                                          >  4:309107‑M2/43‑149 (MQ=255)                                                                                                           cc‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGc                                         <  2:172387/149‑1 (MQ=255)                                                                                                                  atcggctcggcggtgaaggcgcgtggcgaccagcgAAGAAACCCTGCTGCGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTAt                                                                     >  3:82403‑M2/36‑115 (MQ=255)                                                                                                                  atcggctcggcggtgaaggcgcgtggcgaccagcgAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTAt                                                                     <  4:82403‑M2/80‑1 (MQ=255)                                                                                                                     gCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGGTACCt                                  >  7:227796/1‑147 (MQ=255)                                                                                                                       cACGCGCCTTCACCGCCGAGCCGATCTGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCGTTGGCTCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGc                              <  1:242417/149‑1 (MQ=255)                                                                                                                       cACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCAGAACTGGGAGCGTTACCTGAGc                              <  7:205356/149‑1 (MQ=255)                                                                                                                                            cgaTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCctg                           <  6:191152/131‑1 (MQ=255)                                                                                                                                            cgaTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCctg                           >  5:191152/1‑131 (MQ=255)                                                                                                                                              aTCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTCCTGGTGCCCTTCAATCGCaa       >  3:146856/1‑149 (MQ=255)                                                                                                                                               tCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGa                                                          <  6:288204/97‑1 (MQ=255)                                                                                                                                               tCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGa                                                          >  5:288204/1‑97 (MQ=255)                                                                                                                                                   cgAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTggg  >  1:124916‑M2/3‑149 (MQ=255)                                                                                                                                                   cgAAGAAACACTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGCAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGAAACTggg  >  1:313853‑M2/3‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCGCGACGGCACGCAGTAGCGTGCGCTTTTCCCGTCCGTTCGCAGGAGCCGCCATGAGCGCCAACCCCCGCATTGCCGATTACGCCATCAACGAGCAGTTCATCAACC‑GCTGGTCGCCACGCGCCTTCACCGCCGAGCCGATCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGG  >  NC_002947/5207016‑5207309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.