New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5320576 =	42 (0.810)	4 (0.080)	3/248	NT	8.3%	coding (339/801 nt)	PP_4682	TPR repeat‑containing protein
	?	NC_002947	5320623 =	48 (0.970)					coding (292/801 nt)	PP_4682	TPR repeat‑containing protein

GACGCTGCCGGAGGATTCCGGTGTCACCGTGATGATCCCGCAGGGCGCAGGCGCTTCGGGCATCCAGACGTTCCCGGCGTCCAATGGCGCCGCGCCGATCAGTACCTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5320729‑5320576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGGCAGCGTCTGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGC  >  NC_002947/5320623‑5320769                                                                                                                                                                                                                                                                                                               GACGCTGCCGGAGGATTCCGGTGTCACCGTGATGATCCCGCAGGGCGCAGGCGCTTCGGGCATCCAGACGTTCCCGGCGTCCAATGGCGCCGCGCCGATCAGTACCTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTT                                                                                                                                                          <  7:276126/149‑1   CGCTGCCGGAGGATTCCGGTGTCACCGTGATGATCCCGCAGGGCGCAGGCGCTTCGGGCATCCAGACGTTCCCGGCGTCCAATGGCGCCGCGCCGATCAGTACCTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCG                                                                                                                                                        <  4:160241/149‑1                                                                                                          CTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCGGCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGG                                                 >  8:13395/1‑149                                                                                                          CTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCGGCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGG                                                                              <  1:120658/120‑1                                                                                                          CTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCGGCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGG                                                                              >  2:120658/1‑120                                                                                                           TCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCGGCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGG                                                 >  6:247255/1‑148                                                                                                                                                       GGCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGGCAGCGTCTGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCC      >  3:191074/1‑147                                                                                                                                                       GGCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGC‑GGATCATCACGGTGACACCGGAATCCTCCGGCAGCGTCTGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGA    <  1:249861/148‑1                                                                                                                                                        GCGAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGGCAGCGT                                           <  2:43229/109‑1                                                                                                                                                         CGAGGTACTGAGCGGCGCGGCGCCATTGGACGCCGGCAACGTCTGGATCCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGGCAGCGTCAGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGC  <  6:186270/149‑1                                                                                                                                                                                                                                                                                                               GACGCTGCCGGAGGATTCCGGTGTCACCGTGATGATCCCGCAGGGCGCAGGCGCTTCGGGCATCCAGACGTTCCCGGCGTCCAATGGCGCCGCGCCGATCAGTACCTCGCCGATCACGCCAGGGCCGATCAGTACAGGGCCTGTCAGTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5320729‑5320576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgAGGTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCTCCGGCAGCGTCTGCGCCTGGGCGGTGCCGGCGTTATAGCCACCCGCCGAGC  >  NC_002947/5320623‑5320769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.