New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5320576 =	42 (0.810)	4 (0.080)	3/248	NT	8.3%	coding (339/801 nt)	PP_4682	TPR repeat‑containing protein
	?	NC_002947	5320623 =	48 (0.970)					coding (292/801 nt)	PP_4682	TPR repeat‑containing protein

GACCGTCCAGCTGCTCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCT  >  NC_002947/5320428‑5320718                                                                                                                                                      |                                                                                                                                                gACCGTCCAGCTGCTCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGgc                                                                                                                                                 >  1:83290/1‑149 (MQ=255) gACCGTCCAGCTGCTCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGgc                                                                                                                                                 >  3:90058/1‑149 (MQ=255)   gctcggcgggtggctataacgccggcaccgcccaggcgctgacgctgccggaggattccggtgtcaccgtgatgatcccgcagggcgcaggcgcttcggggatccagacgttgccggcgtccaatggcgccgcgccgctcagtacctCg                                                                                                                                                <  6:186270‑M1/2‑1 (MQ=255)    cGTCGAGGTGGTCGTGGGGGGAGAGGCCGCCTGCGGCGGCGGTTCGCGGAATACCGGTTGGCGCTCTTGCGCTTTGGTGGGTGCTGTTCATCGCTGCTATGTCGATGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATGGGCGcc                                                                                                                                              <  8:195589/149‑1 (MQ=255)      tcggcgggtggctataacgccggcaccgcccaggcgcagacgctgccggaggattccggtgtcaccgtgatgatccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGcc                                                                                                                                              <  1:249861‑M1/4‑1 (MQ=255)       ggcgggtggctataacgccggcaccgcccaggcgcagacgctgccggaggattccggtgtcaccgtgatgatcccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGcc                                                                                                                                              >  3:191074‑M1/144‑147 (MQ=255)        cAGCTGCTCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAAc                                                                                                                                          <  6:322630/149‑1 (MQ=255)          gctgctCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTg                                                                                                                                        <  2:83290/149‑1 (MQ=255)              ctCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAg                                                                                                                                    <  5:141923/149‑1 (MQ=255)                 ggcgGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGGTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGcc                                                                                                                                 <  8:144421/147‑1 (MQ=255)                      ccGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGATTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTa                                                                                                                            >  5:40353/1‑149 (MQ=255)                       cGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTAc                                                                                                                           <  4:90058/149‑1 (MQ=255)                           aGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAg                                                                                                                                    >  8:125113/1‑136 (MQ=255)                           aGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAg                                                                                                                                    <  7:125113/136‑1 (MQ=255)                              ccgccgGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCgg                                                                                                                    >  6:34055/1‑149 (MQ=255)                                         ggcgCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGc                                                                                                             <  3:158875/145‑1 (MQ=255)                                         ggcgCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGc                                                                                                             >  4:158875/1‑145 (MQ=255)                                            acgctgccggaggattccggtgtcaccgtgatgatcccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGc                                                                                                                                               <  2:43229‑M1/3‑1 (MQ=255)                                                 gcgGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAg                                                                                                 <  6:315860/149‑1 (MQ=255)                                                  cgGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAgg                                                                                                <  1:329936/149‑1 (MQ=255)                                                  ccggaggattccggtgtcaccgtgatgatcccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGa                                                                                                  >  6:247255‑M1/101‑148 (MQ=255)                                                  ccggaggattccggtgtcaccgtgatgatcccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAg                                                                                                 >  8:13395‑M1/101‑149 (MQ=255)                                                     aaTACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TAc                                                                                            <  5:34055/149‑1 (MQ=255)                                                       tACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACt                                                                                           >  5:150227/1‑148 (MQ=255)                                                       tACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACt                                                                                           >  6:10391/1‑148 (MQ=255)                                                          cGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATc                                                                                       >  6:52223/1‑149 (MQ=255)                                                          cGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGCCAATCGGGATGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATc                                                                                       >  5:228289/1‑149 (MQ=255)                                                                      tGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCa                                                                           >  4:141296/1‑149 (MQ=255)                                                                        gggtgttGCGGGGTGCTGGTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCAt                                                                          <  6:228289/143‑1 (MQ=255)                                                                        gcgcTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGCACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCAtt                                                                         >  6:154070/1‑149 (MQ=255)                                                                            tttGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGAc                                                                     >  7:240628/1‑149 (MQ=255)                                                                               cccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAg                                                                                                 >  2:120658‑M1/72‑120 (MQ=255)                                                                               cccgcagggcgcaggcgcttcgggcatccagacgttcccggcgtccaatggcgccgcgccgatcagtacctCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAg                                                                                                 <  1:120658‑M1/49‑1 (MQ=255)                                                                                   ggTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGa                                                              <  8:240628/149‑1 (MQ=255)                                                                                          ttCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATTGGGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCt                                                        >  1:78075/1‑149 (MQ=255)                                                                                          ttCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGa                                                                      <  6:225047/134‑1 (MQ=255)                                                                                          ttCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGa                                                                      >  5:225047/1‑134 (MQ=255)                                                                                          ttCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCt                                                        <  5:96019/148‑1 (MQ=255)                                                                                          ttCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCt                                                        <  5:52223/148‑1 (MQ=255)                                                                                             aTCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCAtt                                                                         <  5:325355/128‑1 (MQ=255)                                                                                             aTCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCAtt                                                                         >  6:325355/1‑128 (MQ=255)                                                                                             aTCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGAt                                                    >  2:99742/1‑149 (MQ=255)                                                                                             aTCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGAt                                                    >  3:45216/1‑149 (MQ=255)                                                                                                 cAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATAccc                                                >  3:215523/1‑149 (MQ=255)                                                                                                     gATGGCGCAGGGGTCGTCGGCAATCGGGGTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGGGATCGGCGAGGCTACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGaa                                             <  1:247701/149‑1 (MQ=255)                                                                                                              gggTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTgcgc                                   >  8:52458/1‑149 (MQ=255)                                                                                                                       ggCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGa                          <  7:52458/149‑1 (MQ=255)                                                                                                                          aaTCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGatc                        >  7:287501/1‑148 (MQ=255)                                                                                                                                    ggATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGa              <  4:45216/148‑1 (MQ=255)                                                                                                                                    ggATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGa              >  2:98185/1‑148 (MQ=255)                                                                                                                                              gtCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCt                                                        <  2:220764/97‑1 (MQ=255)                                                                                                                                              gtCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCt                                                        >  1:220764/1‑97 (MQ=255)                                                                                                                                                cATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAAtcct  >  1:72580/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                GACCGTCCAGCTGCTCGTCGGCCGACAGGCCGCCGGCGGCGGCGCTGCGCGGAATACCGGTTGGCGCACTGGCGCTTTGCGGGGTGCTGTTCATCGCAGCGATGTCGAAGGGTTCGTCGGCAATCGGGTTGGGATT‑GGTGGTCATCGGCGCCGAACTGACAGGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGG‑TACTGATCGGCGCGGCGCCATTGGACGCCGGGAACGTCTGGATGCCCGAAGCGCCTGCGCCCTGCGGGATCATCACGGTGACACCGGAATCCT  >  NC_002947/5320428‑5320718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.