New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5383071 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	coding (210/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR
	?	NC_002947	5383142 =	36 (0.740)					coding (139/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR

GGGATGATTCTGGAAGGCACGCTGACCTCGGGGCAGCGGCTGCCGGCCGAGCGCGTCCTGGCCGAGCAGTTTGGTGTGTCCCGCCCGTCACTGCGTGAGGCGATCCAGAAGCTGGTGGCCAAGGGGCTGCTGGTCAGCCGTCAGGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5383220‑5383071 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTA  >  NC_002947/5383142‑5383264                                                                                                                                                                                                                                                                                   GGGATGATTCTGGAAGGCACGCTGACCTCGGGGCAGCGGCTGCCGGCCGAGCGCGTCCTGGCCGAGCAGTTTGGTGTGTCCCGCCCGTCACTGCGTGAGGCGATCCAGAAGCTGGTGGCCAAGGGGCTGCTGGTCAGCCGTCAGGGCGG                                                                                                                              <  5:213903/149‑1   GATGATTCTGGAAGGCACGCTGACCTCGGCGCAGCGGCTGCCGGCCGAGCGCGTCCTGGCCGAGCAGTTTGGTGTGTCCCGCCCGTCACTGCGAGACGCGATCCAGAAGCTGGTGGCAAAGGGGCTGCTGGTCAGCCGTCATGGCcgcg                                                                                                                            >  4:234475/1‑145                                                                                 CCGCCCGTCACTGCGTGAGGCGATCCAGAAGCTGGTGGCCAAGGGGCTGCTGGTCAGCCGTCAGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCC                                              >  8:275836/1‑149                                                                                    CCCGTCACTGCGTGAGGCGATCCAGAAGCTGGTGGCCAAGGGGCTGCTGGTCAGCCGTCAGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCC                                               <  3:52524/145‑1                                                                                    CCCGTCACTGCGTGAGGCGATCCAGAAGCTGGTGGCCAAGGGGCTGCTGGTCAGCCGTCAGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCC                                               >  4:52524/1‑145                                                                                                                                                GGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTA  >  7:100316/1‑130                                                                                                                                                GGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTA  <  8:100316/130‑1                                                                                                                                                                                                                                                                                   GGGATGATTCTGGAAGGCACGCTGACCTCGGGGCAGCGGCTGCCGGCCGAGCGCGTCCTGGCCGAGCAGTTTGGTGTGTCCCGCCCGTCACTGCGTGAGGCGATCCAGAAGCTGGTGGCCAAGGGGCTGCTGGTCAGCCGTCAGGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5383220‑5383071 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTA  >  NC_002947/5383142‑5383264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.