New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5383071 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	coding (210/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR
	?	NC_002947	5383142 =	36 (0.740)					coding (139/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR

GGCACGCTGGGCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGC  >  NC_002947/5382924‑5383204                                                                                                                                                    |                                                                                                                                      ggCACGCTGGGCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGcccc                                                                                                                                      <  6:287959/149‑1 (MQ=255)    aCGCTGGGCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAGCTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGc                                                                                                                                   <  5:277148/149‑1 (MQ=255)          ggCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGAc                                                                                                                             <  8:262664/149‑1 (MQ=255)          ggCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGAc                                                                                                                             <  3:68899/149‑1 (MQ=255)           gCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACg                                                                                                                            >  3:260229/1‑149 (MQ=255)                 tAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAACAGCTGCAGGAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGAc                                                                                                                      <  3:233282/149‑1 (MQ=255)                   aTAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACca                                                                                                                    <  7:176365/149‑1 (MQ=255)                      ggCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACcagca                                                                                                                 <  5:216843/149‑1 (MQ=255)                      ggCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACcag                                                                                                                   <  1:23775/147‑1 (MQ=255)                      ggCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACcag                                                                                                                   >  2:23775/1‑147 (MQ=255)                         tacgccaacggcgcctgtccgacgacattgtcgatcggctggaagggatgattctggaaggcacgctgacctcggggcagcggctgccggccgagcgcgtcctggccgagcagtttggtgtgtCCCGccc                                                                                                                                 <  8:100316‑M1/7‑1 (MQ=255)                         tacgccaacggcgcctgtccgacgacattgtcgatcggctggaagggatgattctggaaggcacgctgacctcggggcagcggctgccggccgagcgcgtcctggccgagcagtttggtgtgtCCCGccc                                                                                                                                 >  7:100316‑M1/124‑130 (MQ=255)                             gACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACg                                                                                                                            <  3:270457/131‑1 (MQ=255)                             gACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACg                                                                                                                            >  4:270457/1‑131 (MQ=255)                                   tCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCGGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGccac                                                                                                    >  5:201430/1‑149 (MQ=255)                                     cAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTg                                                                                                                        <  6:67714/127‑1 (MQ=255)                                     cAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTg                                                                                                                        >  5:72355/1‑127 (MQ=255)                                     cAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTg                                                                                                                        >  5:67714/1‑127 (MQ=255)                                     cAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTg                                                                                                                        <  6:72355/127‑1 (MQ=255)                                                       gAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCAc                                                                                >  6:60284/1‑149 (MQ=255)                                                             gTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGt                                                                           >  4:230203/1‑148 (MQ=255)                                                                    tGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGAcgggcg                                                                   <  8:272884/149‑1 (MQ=255)                                                                     gggatgattctggaaggcacgctgacctcggggcagcggctgccggccgagcgcgtcctggccgagcagtttggtgtgtCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGAcgggcgg                                                                  >  8:275836‑M1/80‑149 (MQ=255)                                                                      ggatgattctggaaggcacgctgacctcggggcagcggctgccggccgagcgcgtcctggccgagcagtttggtgtgtCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGAcggg                                                                     >  4:52524‑M1/79‑145 (MQ=255)                                                                      ggatgattctggaaggcacgctgacctcggggcagcggctgccggccgagcgcgtcctggccgagcagtttggtgtgtCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGAcggg                                                                     <  3:52524‑M1/67‑1 (MQ=255)                                                                            ggCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGCCCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCCGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGacacac                                                           >  6:262911/1‑149 (MQ=255)                                                                                    gCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGc                                                   >  4:316488/1‑149 (MQ=255)                                                                                           cagcTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCa                                            <  5:60284/149‑1 (MQ=255)                                                                                                        ggggCGCTGAAGGGCGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTcggc                               <  4:247681/149‑1 (MQ=255)                                                                                                                  aGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGc                     <  3:230203/149‑1 (MQ=255)                                                                                                                      ggACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGcc                 >  8:26562/1‑149 (MQ=255)                                                                                                                       gACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGccc                <  3:316488/149‑1 (MQ=255)                                                                                                                          cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCGTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACAGACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGa             <  5:38887/149‑1 (MQ=255)                                                                                                                          cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGTCGCGCTCGGCCGGCAGCCGCTGCCCCGa             <  1:187204/149‑1 (MQ=255)                                                                                                                          cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGa             <  6:201430/149‑1 (MQ=255)                                                                                                                          cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGa             <  7:26562/149‑1 (MQ=255)                                                                                                                            cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGCCCAGCAGCCCCTTGGCCACCAGCGTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAgg           >  2:234814/1‑149 (MQ=255)                                                                                                                            cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAgg           >  1:161023/1‑149 (MQ=255)                                                                                                                            cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCACTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGTGCGGGCCACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAgg           >  3:234475/1‑149 (MQ=255)                                                                                                                              aCGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTc         <  4:260229/149‑1 (MQ=255)                                                                                                                                         acaAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGc  <  2:170436/145‑1 (MQ=255)                                                                                                                                         acaAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGc  >  1:170436/1‑145 (MQ=255)                                                                                                                                                    |                                                                                                                                      GGCACGCTGGGCAGCGTAATAGGCGCAGGACGCCTCCAGGGTATGGCGGAACTCGAGCAGGTCACGCTGCGCTTCGGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGC  >  NC_002947/5382924‑5383204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.