New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5383071 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	coding (210/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR
	?	NC_002947	5383142 =	36 (0.740)					coding (139/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR

GGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACC  >  NC_002947/5382999‑5383278                                                                                                                                                |                                                                                                                                         ggCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGCCCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCCGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGacacac                                                                                                                                     >  6:262911/1‑149 (MQ=255)         gCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGc                                                                                                                             >  4:316488/1‑149 (MQ=255)                cagcTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCa                                                                                                                      <  5:60284/149‑1 (MQ=255)                             ggggCGCTGAAGGGCGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTcggc                                                                                                         <  4:247681/149‑1 (MQ=255)                                       aGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGc                                                                                               <  3:230203/149‑1 (MQ=255)                                           ggACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGcc                                                                                           >  8:26562/1‑149 (MQ=255)                                            gACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGccc                                                                                          <  3:316488/149‑1 (MQ=255)                                               cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCGTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACAGACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGa                                                                                       <  5:38887/149‑1 (MQ=255)                                               cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGTCGCGCTCGGCCGGCAGCCGCTGCCCCGa                                                                                       <  1:187204/149‑1 (MQ=255)                                               cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGa                                                                                       <  7:26562/149‑1 (MQ=255)                                               cccAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGa                                                                                       <  6:201430/149‑1 (MQ=255)                                                 cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGCCCAGCAGCCCCTTGGCCACCAGCGTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAgg                                                                                     >  2:234814/1‑149 (MQ=255)                                                 cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAgg                                                                                     >  1:161023/1‑149 (MQ=255)                                                 cAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCACTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGTGCGGGCCACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAgg                                                                                     >  3:234475/1‑149 (MQ=255)                                                   aCGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTc                                                                                   <  4:260229/149‑1 (MQ=255)                                                              acaAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGc                                                                            >  1:170436/1‑145 (MQ=255)                                                              acaAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGc                                                                            <  2:170436/145‑1 (MQ=255)                                                                        cgcgGCCATGACGGCTGACCAGCAGCCCCTTTGCCACCAGCTTCTGGATCGCGTCTCGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCGCCGAGGTCAGCGTGCCTTCCAGAatcatc                                                              >  4:234475‑M1/5‑149 (MQ=255)                                                                          ccgcccgtcactgcgtgaggcgatccagaagctggtggccaaggggctgctggtcagccgtcagggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATccc                                                            >  8:275836‑M2/71‑149 (MQ=255)                                                                          CCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATccc                                                            <  5:213903‑M1/149‑1 (MQ=255)                                                                             cccgtcactgcgtgaggcgatccagaagctggtggccaaggggctgctggtcagccgtcagggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATcc                                                             >  4:52524‑M2/68‑145 (MQ=255)                                                                             cccgtcactgcgtgaggcgatccagaagctggtggccaaggggctgctggtcagccgtcagggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATcc                                                             <  3:52524‑M2/78‑1 (MQ=255)                                                                                  aCGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGcc                                                    >  3:298504/1‑149 (MQ=255)                                                                                       tGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCg                                               >  7:181546/1‑149 (MQ=255)                                                                                         aCCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGa                                              <  4:298504/148‑1 (MQ=255)                                                                                            agcagcCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGa                                              >  7:299492/1‑145 (MQ=255)                                                                                            agcagcCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGa                                              <  8:299492/145‑1 (MQ=255)                                                                                                   ccTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGtcgtcg                                   >  2:235289/1‑149 (MQ=255)                                                                                                         ccaccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAgg                             >  5:336429/1‑149 (MQ=255)                                                                                                          caccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGgc                            >  7:91458/1‑149 (MQ=255)                                                                                                          caccaGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGgc                            >  3:303563/1‑149 (MQ=255)                                                                                                                       aTCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCAACAATGTCGTCGGACAGGCGCCGTTGGCGTAc               <  6:213903/149‑1 (MQ=255)                                                                                                                        tCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTAcc              <  6:336429/149‑1 (MQ=255)                                                                                                                        tCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTAcc              >  6:97595/1‑149 (MQ=255)                                                                                                                           ccTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGa           <  8:181546/149‑1 (MQ=255)                                                                                                                           ccTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGa           <  5:262911/149‑1 (MQ=255)                                                                                                                           ccTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGa           >  3:2719/1‑149 (MQ=255)                                                                                                                            cTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                   <  7:168208/140‑1 (MQ=255)                                                                                                                            cTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                   >  8:168208/1‑140 (MQ=255)                                                                                                                                   aGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                   >  6:317219/1‑133 (MQ=255)                                                                                                                                   aGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGc                   <  5:317219/133‑1 (MQ=255)                                                                                                                                    gTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAAcc  <  8:91458/149‑1 (MQ=255)                                                                                                                                         gggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTa                >  7:100316‑M2/8‑130 (MQ=255)                                                                                                                                         gggcgggACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTa                <  8:100316‑M2/123‑1 (MQ=255)                                                                                                                                                |                                                                                                                                         GGCACTGTGCTCGAGCAGCTGCAGCAACGGGTCGCTGAAGGTGGACCCCAACGACTCCGCCACAAAATTGCCCCCGCCCTGACGGCTGACCAGCAGCCCCTTGGCCACCAGCTTCTGGATCGCCTCACGCAGTGACGGGCGGGACACACCAAACTGCTCGGCCAGGACGCGCTCGGCCGGCAGCCGCTGCCCCGAGGTCAGCGTGCCTTCCAGAATCATCCCTTCCAGCCGATCGACAATGTCGTCGGACAGGCGCCGTTGGCGTACCTGATCAAAAACC  >  NC_002947/5382999‑5383278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.