New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5487779 | 50 (0.970) | 3 (0.060) | 3/246 | NT | 5.5% | coding (1108/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | = 5487836 | 55 (1.130) | coding (1165/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
AGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5487685‑5487779 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCA < NC_002947/5487836‑5487690 AGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCAC < 1:285556/149‑1 CCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACC < 3:318292/142‑1 CCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACC > 4:318292/1‑142 CTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCC > 1:318974/1‑149 CTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCC > 5:22323/1‑149 GCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCg < 6:296730/148‑2 GCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCC < 2:227347/147‑1 GGCCAGTGCACGGCTGGCGCTGAAACTCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCA < 7:138179/149‑1 AGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5487685‑5487779 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCA < NC_002947/5487836‑5487690 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |