New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5490301 =	46 (0.890)	4 (0.080)	4/238	NT	9.4%	coding (482/657 nt)	PP_5714	hypothetical protein
	?	NC_002947	5490342 =	35 (0.740)					coding (441/657 nt)	PP_5714	hypothetical protein

GTCGCTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5490456‑5490301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtcgatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCT  >  NC_002947/5490342‑5490489                                                                                                                                                                                                                                                                                                                  GTCGCTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGT                                                                                                                                                             >  4:174601/1‑149  TCGCTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTC                                                                                                                                                            >  6:215358/1‑149    GCTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACAT‑GAAATGTCGA                                                                                                                                                          <  4:131042/148‑1     CTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGAT                                                                                                                                                         <  8:287030/149‑1     CTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCACCAAAGCTGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGAT                                                                                                                                                         <  6:54274/149‑1      TTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGAT                                                                                                                                                         >  3:462/1‑148        CAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGATG                                                                                                                                                        <  5:131259/147‑1                                                     AGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGAT                                                                                                                                                         <  8:73133/101‑1                                                     AGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGAT                                                                                                                                                         >  7:73133/1‑101                                                                                                                    TTCATCGACATGGTGTTGGTGCACATGGAAATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCT                                           >  1:292136/1‑148                                                                                                                     TCATCGACATGGTGTTGGTGCACATGGAAATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTG                                          >  1:7097/1‑148                                                                                                                       ATCGACATGGTGTTGGTGCACATGGAAATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGA                                                                                    <  7:45271/104‑1                                                                                                                       ATCGACATGGTGTTGGTGCACATGGAAATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGA                                                                                    >  8:45271/1‑104                                                                                                                                                       GATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCG        <  2:243036/148‑1                                                                                                                                                       GATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCG        <  2:140558/148‑1                                                                                                                                                         TGAAGCCGGTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCG        <  4:237631/146‑1                                                                                                                                                         TGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAG     <  6:131259/149‑1                                                                                                                                                            AGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCT  <  6:187786/149‑1                                                                                                                                                                                                                                                                                                                  GTCGCTTCAGGCGCTGCGCAATGACAGCCAGGCACTGACCGCGTTTGAATCCAGGGCAGTCTCCAAAGCGGTCGGGCGCTTTCAGTTGCTGCCTTGCTCACAACAGTCGAGCGGCTTCATCGACATGGTGTTGGTGCACATGGAAATGTCGATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5490456‑5490301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtcgatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCT  >  NC_002947/5490342‑5490489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.