New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5490301 =	46 (0.890)	4 (0.080)	4/238	NT	9.4%	coding (482/657 nt)	PP_5714	hypothetical protein
	?	NC_002947	5490342 =	35 (0.740)					coding (441/657 nt)	PP_5714	hypothetical protein

TTCGCGGAACCCCTGCAAGTTGAAGTGGATCACTTCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCTT  >  NC_002947/5490198‑5490490                                                                                                                                                  |                                                                                                                                                     ttCGCGGAACCCCTGCAAGTTTAAGTGGATCACTTCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGc                                                                                                                                                  <  3:185294/149‑1 (MQ=255)            ccTGCAAGTTGAAGTGGATCACTTCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACtgttgt                                                                                                                                       >  3:174601/1‑149 (MQ=255)             cTGCAAGTTGAAGTGGATCACTTCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTtgtg                                                                                                                                      <  3:258501/149‑1 (MQ=255)                                   tCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGgc                                                                                                                              <  2:314447/135‑1 (MQ=255)                                   tCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGgc                                                                                                                              >  1:314447/1‑135 (MQ=255)                                    cGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAgc                                                                                                                 <  3:127707/147‑1 (MQ=255)                                     gACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAgcgc                                                                                                               <  5:29839/148‑1 (MQ=255)                                            aTGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGc                                                                                                       >  4:462/1‑149 (MQ=255)                                                  aGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTCTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCAGCTAGACTGTTGTGAGCAAGGCAGCGACTGAAAGCGCCCGACCGCGTTg                                                                                                   >  2:223737/1‑147 (MQ=255)                                                    gAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGgaga                                                                                               <  1:289083/149‑1 (MQ=255)                                                    gAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGgaga                                                                                               >  6:20451/1‑149 (MQ=255)                                                                aCTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGAt                                                                                    <  5:20451/148‑1 (MQ=255)                                                                  tGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACATATTCCATGTGCACCAACACAATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGAtt                                                                                   >  1:243036/1‑148 (MQ=255)                                                                       aaCTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAAcgc                                                                            >  5:187786/1‑149 (MQ=255)                                                                          tGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCgg                                                                          >  5:215358/1‑148 (MQ=255)                                                                            cATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGt                                                                         >  1:140558/1‑147 (MQ=255)                                                                             aTGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGgaga                                                                                               <  4:51449/124‑1 (MQ=255)                                                                             aTGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGgaga                                                                                               >  3:51449/1‑124 (MQ=255)                                                                              tGAACAAGAAGCCGTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTTCAACAACACCATGTCGATGAAGCCGCTCGACTGTTGTGTGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGt                                                                     <  3:35102/149‑1 (MQ=255)                                                                              tGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGt                                                                     >  1:56763/1‑149 (MQ=255)                                                                              tGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGt                                                                     >  1:298816/1‑149 (MQ=255)                                                                                aaCAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCGATGTGCACCAACACCATGTCGATGAAGCCGGTCGACTGTTGTGAGCAAGGCAGAAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCGGGATTCAACCGCGGTCAGTg                                                                    >  8:274741/1‑148 (MQ=255)                                                                                 aCAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGaaa                                                                                                                   >  2:294482/1‑100 (MQ=255)                                                                                 aCAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGaaa                                                                                                                   <  1:294482/100‑1 (MQ=255)                                                                                    agaagCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCaa                                                                                                                         <  4:131891/91‑1 (MQ=255)                                                                                    agaagCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCaa                                                                                                                         >  3:131891/1‑91 (MQ=255)                                                                                        gCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGt                                                           >  1:68649/1‑149 (MQ=255)                                                                                        gCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGt                                                           >  1:63927/1‑149 (MQ=255)                                                                                              ggAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGTAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCAtt                                                       <  7:274741/147‑1 (MQ=255)                                                                                               gAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACt                                                                                                                       <  2:179295/82‑1 (MQ=255)                                                                                                aGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGATCGACTGTTGTGAGCAAgg                                                                                                                               <  7:212656/73‑1 (MQ=255)                                                                                                aGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGATCGACTGTTGTGAGCAAgg                                                                                                                               >  8:212656/1‑73 (MQ=255)                                                                                                 ggTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTgcg                                                    >  7:270573/1‑147 (MQ=255)                                                                                                   tCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACAGAAAGCGCCAGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAgc                                                >  3:237631/1‑149 (MQ=255)                                                                                                         ttcatcgacatggtgttggtgcacatggaaatgtcgatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCt                                            >  1:292136‑M2/42‑148 (MQ=255)                                                                                                          tcatcgacatggtgttggtgcacatggaaatgtcgatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTg                                           >  1:7097‑M2/41‑148 (MQ=255)                                                                                                          CATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTg                                           <  5:131259‑M1/147‑1 (MQ=255)                                                                                                           ATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCt                                                                                        >  7:73133‑M1/1‑101 (MQ=255)                                                                                                           ATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCt                                                                                        <  8:73133‑M1/101‑1 (MQ=255)                                                                                                           ATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGaa                                         >  3:462‑M1/1‑148 (MQ=255)                                                                                                           ATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAg                                        <  8:287030‑M1/149‑1 (MQ=255)                                                                                                           ATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACAGCTTTGGTGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAg                                        <  6:54274‑M1/149‑1 (MQ=255)                                                                                                            atcgacatggtgttggtgcacatggaaatgtcgatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGa                                                                                     >  8:45271‑M2/39‑104 (MQ=255)                                                                                                            atcgacatggtgttggtgcacatggaaatgtcgatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGa                                                                                     <  7:45271‑M2/66‑1 (MQ=255)                                                                                                            TCGACAT‑TTC‑ATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGc                                       <  4:131042‑M1/148‑1 (MQ=255)                                                                                                              GACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGcga                                     >  6:215358‑M1/1‑149 (MQ=255)                                                                                                               ACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGcgac                                    >  4:174601‑M1/1‑149 (MQ=255)                                                                                                                           tgCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTggg                             >  2:29034/1‑145 (MQ=255)                                                                                                                               ccAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGCCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGa                     >  3:1993/1‑149 (MQ=255)                                                                                                                                      cATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGc              >  2:179793/1‑149 (MQ=255)                                                                                                                                            gatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCcggcg         <  2:140558‑M2/142‑1 (MQ=255)                                                                                                                                            gatgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCcggcg         <  2:243036‑M2/142‑1 (MQ=255)                                                                                                                                              tgaaGCCGGTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCcggcg         <  4:237631‑M2/142‑1 (MQ=255)                                                                                                                                              tgaaGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAg      <  6:131259‑M2/145‑1 (MQ=255)                                                                                                                                                 aGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCt   <  6:187786‑M2/148‑1 (MQ=255)                                                                                                                                                  gCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCtt  >  3:6733/1‑149 (MQ=255)                                                                                                                                                  gCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCtt  >  6:212238/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TTCGCGGAACCCCTGCAAGTTGAAGTGGATCACTTCGACACGCATGTCCAGGAGTTTTACTTCACTGTTCAACTGCATGAACAAGAAGCCCTTGGAGGTCTTTTTCATCGACAT‑TTCCATGTGCACCAACACCATGTCGATGAAGCCGCTCGACTGTTGTGAGCAAGGCAGCAACTGAAAGCGCCCGACCGCTTTGGAGACTGCCCTGGATTCAAACGCGGTCAGTGCCTGGCTGTCATTGCGCAGCGCCTGAAGCGACGACTGGGCAGATTGATAATGGCCGGCGGAGCCTT  >  NC_002947/5490198‑5490490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.