New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5565307	48 (0.930)	3 (0.060)	3/250	NT	5.8%	coding (279/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565341	51 (1.030)					coding (245/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA

CGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5565196‑5565307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAAGGCGTTGATCGATGGCCTGGCCGACATGCCGGCCGCCGATGCGACGGTGCGCGCCGAGCTGGAAGCG  <  NC_002947/5565341‑5565196                                                                                                                                                                                                                                                                    CGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCG                                                                                                                <  1:227375/148‑1    TTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGG                                                                                                               <  7:281191/146‑1    TTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGG                                                                                                               >  8:281191/1‑146                                                                                                                GACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAAGGCGTTGATCGATGGCCTGGCCGACATGCCGGCCGCCGATGCGACGGTGCGCGCCGAGCTGGAAGCG  >  7:268023/1‑147                                                                                                                                                                                                                                                                    CGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5565196‑5565307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgACGCGCTGGAGGCCATGGCCGAGATCACCGCGCGCGGCAAGATCCCGCTGTTGGTCGGCGGCACCATGCTCTATTACAAGGCGTTGATCGATGGCCTGGCCGACATGCCGGCCGCCGATGCGACGGTGCGCGCCGAGCTGGAAGCG  <  NC_002947/5565341‑5565196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.