New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5565307	48 (0.930)	3 (0.060)	3/250	NT	5.8%	coding (279/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565341	51 (1.030)					coding (245/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA

GCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCAT  >  NC_002947/5565160‑5565453                                                                                                                                                    |                                                                                                                                                   gCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCcgc                                                                                                                                                   >  2:220951/1‑149 (MQ=255)      gCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGCCCAACAGCGGGATCTTGCcgcgcgcg                                                                                                                                              >  5:98861/1‑149 (MQ=255)       cAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCgg                                                                                                                                             <  1:220951/149‑1 (MQ=255)        aGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGt                                                                                                                                            <  5:146977/149‑1 (MQ=255)             ggCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGAtct                                                                                                                                       >  1:159198/1‑149 (MQ=255)                cAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAAAGCCTTGTAATAGAGCAAGGTGCCGCCGCCCAACAGCGGGATCTTGCCGCACGCGGTGATCTCgg                                                                                                                                    >  8:271285/1‑149 (MQ=255)                 aGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCgg                                                                                                                                             <  7:147543/139‑1 (MQ=255)                 aGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCgg                                                                                                                                             >  8:147543/1‑139 (MQ=255)                     ccAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATg                                                                                                                               <  5:79422/149‑1 (MQ=255)                     caggggCTTCAGCCGTCGATTCCAGCTCGGCTCGAACCGTCGAATCGGCTGCCGTACTGTAGGCCATGCCAGCGATCAACGCCTGGTAATAGCGCATGGGGCCGCAGACCAACAGCGGTATCTTGCCGCGCGCGGTGATCTCGGCCCTg                                                                                                                               <  8:291781/146‑1 (MQ=255)                              cAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAg                                                                                                                       <  1:146439/148‑1 (MQ=255)                                 ccTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGcgcg                                                                                                                   <  5:273064/149‑1 (MQ=255)                                  cTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGt                                                                                                                  <  1:46073/149‑1 (MQ=255)                                     cgcTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGacgcgctggaggccatggccgagatcaccgcgcgcg                                                                                                                <  1:227375‑M1/148‑37 (MQ=255)                                     cgcTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTc                                                                                                                 >  7:268023‑M2/1‑146 (MQ=255)                                        ttCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGacgcgctggaggccatggccgagatcaccgcgcgcgg                                                                                                               <  7:281191‑M1/146‑38 (MQ=255)                                        ttCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGacgcgctggaggccatggccgagatcaccgcgcgcgg                                                                                                               >  8:281191‑M1/1‑109 (MQ=255)                                          ccAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCAc                                                                                                            <  2:166027/147‑1 (MQ=255)                                            aGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGaa                                                                                                        <  1:42585/149‑1 (MQ=255)                                                       cACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGcggcgg                                                                                             <  7:202897/149‑1 (MQ=255)                                                           gTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGaa                                                                                           >  8:139626/1‑147 (MQ=255)                                                            tCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAg                                                                                        >  6:174460/1‑149 (MQ=255)                                                                    gcggcCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGc                                                                                >  8:194523/1‑149 (MQ=255)                                                                    gcggcCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGc                                                                                >  2:165911/1‑149 (MQ=255)                                                                       gccggcATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCgg                                                                             <  2:159198/149‑1 (MQ=255)                                                                            cATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCga                                                                        <  2:155900/149‑1 (MQ=255)                                                                                  ggccaggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGATTGt                                                                  >  8:95051/1‑149 (MQ=255)                                                                                   gccaggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTc                                                                 <  5:174460/149‑1 (MQ=255)                                                                                     caggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGa                                                               >  6:188139/1‑149 (MQ=255)                                                                                       ggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                              >  4:256140/1‑148 (MQ=255)                                                                                          caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGc                                                                                       >  8:220963/1‑120 (MQ=255)                                                                                          caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGc                                                                                       <  7:220963/120‑1 (MQ=255)                                                                                          caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGc                                                          <  7:139626/149‑1 (MQ=255)                                                                                          caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCAGGGTCGAGAATGTCGATCAGc                                                          >  1:218138/1‑149 (MQ=255)                                                                                                tCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGc                                                    <  7:194523/149‑1 (MQ=255)                                                                                                   aCGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCggg                                                 >  4:37437/1‑149 (MQ=255)                                                                                                     gCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTg                                               <  3:256140/149‑1 (MQ=255)                                                                                                        ttGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCTATCAGCCGgtg‑gggtgggg                                            >  4:33633/1‑147 (MQ=255)                                                                                                            aaTAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGc                                         >  4:66752/1‑148 (MQ=255)                                                                                                              tAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAg                                      >  4:86008/1‑149 (MQ=255)                                                                                                                   cATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGActt                                 <  1:165911/149‑1 (MQ=255)                                                                                                                        tGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCGCGGCCAGGGTCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTc                            <  8:129293/149‑1 (MQ=255)                                                                                                                          ccgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                              >  2:224845/1‑113 (MQ=255)                                                                                                                          ccgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                              <  1:224845/113‑1 (MQ=255)                                                                                                                           cgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCT‑GGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACg                        >  2:303890/1‑149 (MQ=255)                                                                                                                            gccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAct                                  >  4:190576/1‑139 (MQ=255)                                                                                                                            gccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAct                                  <  3:190576/139‑1 (MQ=255)                                                                                                                             ccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACgg                       >  6:141709/1‑149 (MQ=255)                                                                                                                                     cAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGc                 <  2:218138/147‑1 (MQ=255)                                                                                                                                        cGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGTCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAAc            <  7:271285/149‑1 (MQ=255)                                                                                                                                        cGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAAc            <  5:188139/149‑1 (MQ=255)                                                                                                                                           gATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGa         >  4:124475/1‑149 (MQ=255)                                                                                                                                               ttGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCGGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCTGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATc     >  6:252321/1‑149 (MQ=255)                                                                                                                                                  ccGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaa     <  7:281191‑M2/146‑110 (MQ=255)                                                                                                                                                  ccGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaa     >  8:281191‑M2/1‑37 (MQ=255)                                                                                                                                                   cgcgcgcgGTGATCTCGGCCATGGCCTCCAGCGCGTcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaagcg  <  1:227375‑M2/148‑113 (MQ=255)                                                                                                                                                    gacgcgctggaggccatggccgagatcaccgcgcgcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaagcg  >  7:268023‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCGGTGCAGCTCGGCCAGGCCCAGGGCTTCAGCCTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCAT  >  NC_002947/5565160‑5565453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.