New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5565307	48 (0.930)	3 (0.060)	3/250	NT	5.8%	coding (279/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565341	51 (1.030)					coding (245/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA

CTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAAT  >  NC_002947/5565193‑5565476                                                                                                                                                     |                                                                                                                                        cTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGt                                                                                                                                         <  1:46073/149‑1 (MQ=255)    cgcTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTc                                                                                                                                        >  7:268023‑M2/1‑146 (MQ=255)         ccAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCAc                                                                                                                                   <  2:166027/147‑1 (MQ=255)           aGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGaa                                                                                                                               <  1:42585/149‑1 (MQ=255)                      cACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGcggcgg                                                                                                                    <  7:202897/149‑1 (MQ=255)                          gTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGaa                                                                                                                  >  8:139626/1‑147 (MQ=255)                           tCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAg                                                                                                               >  6:174460/1‑149 (MQ=255)                                   gcggcCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGc                                                                                                       >  8:194523/1‑149 (MQ=255)                                   gcggcCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGc                                                                                                       >  2:165911/1‑149 (MQ=255)                                      gccggcATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCgg                                                                                                    <  2:159198/149‑1 (MQ=255)                                           cATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCga                                                                                               <  2:155900/149‑1 (MQ=255)                                                 ggccaggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGATTGt                                                                                         >  8:95051/1‑149 (MQ=255)                                                  gccaggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTc                                                                                        <  5:174460/149‑1 (MQ=255)                                                    caggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGa                                                                                      >  6:188139/1‑149 (MQ=255)                                                      ggccaTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                                                     >  4:256140/1‑148 (MQ=255)                                                         caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGc                                                                                                              <  7:220963/120‑1 (MQ=255)                                                         caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGc                                                                                                              >  8:220963/1‑120 (MQ=255)                                                         caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGc                                                                                 <  7:139626/149‑1 (MQ=255)                                                         caTCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCAGGGTCGAGAATGTCGATCAGc                                                                                 >  1:218138/1‑149 (MQ=255)                                                               tCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGc                                                                           <  7:194523/149‑1 (MQ=255)                                                                  aCGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCggg                                                                        >  4:37437/1‑149 (MQ=255)                                                                    gCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTg                                                                      <  3:256140/149‑1 (MQ=255)                                                                       ttGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCTATCAGCCGgtg‑gggtgggg                                                                   >  4:33633/1‑147 (MQ=255)                                                                           aaTAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGc                                                                >  4:66752/1‑148 (MQ=255)                                                                             tAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAg                                                             >  4:86008/1‑149 (MQ=255)                                                                                  cATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGActt                                                        <  1:165911/149‑1 (MQ=255)                                                                                       tGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCGCGGCCAGGGTCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTc                                                   <  8:129293/149‑1 (MQ=255)                                                                                         ccgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                                                     <  1:224845/113‑1 (MQ=255)                                                                                         ccgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGAt                                                                                     >  2:224845/1‑113 (MQ=255)                                                                                          cgccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCT‑GGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACg                                               >  2:303890/1‑149 (MQ=255)                                                                                           gccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAct                                                         <  3:190576/139‑1 (MQ=255)                                                                                           gccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGAct                                                         >  4:190576/1‑139 (MQ=255)                                                                                            ccgACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACgg                                              >  6:141709/1‑149 (MQ=255)                                                                                                    cAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGc                                        <  2:218138/147‑1 (MQ=255)                                                                                                       cGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGTCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAAc                                   <  7:271285/149‑1 (MQ=255)                                                                                                       cGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAAc                                   <  5:188139/149‑1 (MQ=255)                                                                                                          gATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGa                                >  4:124475/1‑149 (MQ=255)                                                                                                              ttGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCGGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCTGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATc                            >  6:252321/1‑149 (MQ=255)                                                                                                                 ccGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaa                            <  7:281191‑M2/146‑110 (MQ=255)                                                                                                                 ccGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaa                            >  8:281191‑M2/1‑37 (MQ=255)                                                                                                                  cgcgcgcgGTGATCTCGGCCATGGCCTCCAGCGCGTcggcaagatcccgctgttggtcggcggcaccatgctctattacaaggcgttgatcgatggcctggccgacatgccggccgccgatgcgacggtgcgcgccgagctggaagcg                         <  1:227375‑M2/148‑113 (MQ=255)                                                                                                                         ggTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTgg                                         <  2:199802/125‑1 (MQ=255)                                                                                                                         ggTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTgg                                         >  1:199802/1‑125 (MQ=255)                                                                                                                         ggTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACgg                  >  2:17233/1‑148 (MQ=255)                                                                                                                         ggTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGt                 <  3:66752/149‑1 (MQ=255)                                                                                                                                tcGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGTGCAGCCGGTGCGGGTGGGCAGAGAGGACTTCTATCGACGGCTTGGCCGAACCGATATCCATGGCACGGTAGACAAg          >  7:120989/1‑149 (MQ=255)                                                                                                                                  ggCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGAc             <  1:17233/144‑1 (MQ=255)                                                                                                                                  ggCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGt         <  3:86008/148‑1 (MQ=255)                                                                                                                                  ggCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTg        >  1:155724/1‑149 (MQ=255)                                                                                                                                   gCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCT‑GGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGcc      <  1:303890/149‑1 (MQ=255)                                                                                                                                    tgaTGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATTGATCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTTGGCAGCGTGGACTTCTTTCGACGGCTTGGGCGAACCGATATCCATGCCACTGTAGACaatttcc      <  2:5756/147‑6 (MQ=255)                                                                                                                                    ccATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGcc      <  2:155724/149‑1 (MQ=255)                                                                                                                                      aTGGCCTCCAGCGAGTCGGCACGGAACTTCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGACGa    >  1:5756/1‑149 (MQ=255)                                                                                                                                         gCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCATGGTAGACAAGTGCCGAAt  <  5:141709/148‑1 (MQ=255)                                                                                                                                          ccTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGat                               >  7:204767/1‑118 (MQ=255)                                                                                                                                          ccTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGat                               <  8:202761/118‑1 (MQ=255)                                                                                                                                          ccTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGat                               <  8:204767/118‑1 (MQ=255)                                                                                                                                          ccTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGat                               >  7:202761/1‑118 (MQ=255)                                                                                                                                                  gcgTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGc                                        >  7:301160/1‑101 (MQ=255)                                                                                                                                                  gcgTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGc                                        <  8:301160/101‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        CTGCGCTTCCAGCTCGGCGCGCACCGTCGCATCGGCGGCCGGCATGTCGGCCAGGCCATCGATCAACGCCTTGTAATAGAGCATGGTGCCGCCGACCAACAGCGGGATCTTGCCGCGCGCGGTGATCTCGGCCATGGCCTCCAGCGCGTCGGCACGGAACTGCGCGGCGGAATAGCTCTGGGCCGGGTCGAGAATGTCGATCAGCCGGTGCGGGTGGGCAGCGAGGACTTCTTTCGACGGCTTGGCCGAACCGATATCCATGCCACGGTAGACAAGTGCCGAAT  >  NC_002947/5565193‑5565476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.