New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5958930 =	55 (1.060)	5 (0.100)	5/242	NT	10.6%	coding (2334/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958980 =	33 (0.690)					coding (2384/2856 nt)	cyaA	adenylate cyclase

GGCAACAGCTGCGCGAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5959082‑5958930 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGCCC  >  NC_002947/5958980‑5959126                                                                                                                                                                                                                                                                                                              GGCAACAGCTGCGCGAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTT                                                                                                                                                          <  7:77657/148‑1   CAACAGCTGCGCGAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCC                                                                                                                                                       <  7:288181/149‑1   CAACAGCTGCGCGAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGC                                                                                                                                                        >  5:53488/1‑148               GAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTT                                                                                                                                                          >  7:60650/1‑134               GAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTT                                                                                                                                                          <  8:60650/134‑1                                                                                                  GTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCG                                                         >  7:288998/1‑148                                                                                                       AGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGAT                                                                     >  5:235793/1‑131                                                                                                       AGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGAT                                                                     <  6:235793/131‑1                                                                                                        GTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCG                                                                                >  5:301126/1‑119                                                                                                        GTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCG                                                                                <  6:301126/119‑1                                                                                                                                               GTTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGC           <  8:288998/149‑1                                                                                                                                                     GCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTG      <  6:290563/148‑1                                                                                                                                                      CCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGC    >  3:61822/1‑149                                                                                                                                                        ACTGCAACGCCTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGCCC  >  7:2114/1‑149                                                                                                                                                                                                                                                                                                              GGCAACAGCTGCGCGAAGTGGATATCCAGCGAGGCGGGCCGCAGGCTATCGAGGGGCAGGCGTGCATCGCGGCGCATCACCACCGAGCGCAGAAAGCGTTGCAGTGGCAACAGCAGATGCGCTTCGTCATGCAGCGGCAGGCGTTGTTGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5959082‑5958930 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGCCC  >  NC_002947/5958980‑5959126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.