New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5958930 =	55 (1.060)	5 (0.100)	5/242	NT	10.6%	coding (2334/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958980 =	33 (0.690)					coding (2384/2856 nt)	cyaA	adenylate cyclase

GTGCTGGAGCAAGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGCCC  >  NC_002947/5958835‑5959126                                                                                                                                                  |                                                                                                                                                   gTGCTGGAGCAAGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCa                                                                                                                                                 <  5:67670/149‑1 (MQ=255) gTGCTGGAGCAAGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGACAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTg                                                                                                                                                   <  2:302474/147‑1 (MQ=255)    cgcgaagtggatatccagcgaggcgggccgcaggctatcgaggggcaggcgtgcatcgcggcgcatcaccaccgagcgcagaaagcgttgcaGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAAc                                                                                                                                               >  7:288998‑M1/93‑148 (MQ=255)          cAAGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCt                                                                                                                                        >  5:35801/1‑149 (MQ=255)           aaGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTg                                                                                                                                       <  2:169945/149‑1 (MQ=255)            aGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCCGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTgc                                                                                                                                      <  3:314601/149‑1 (MQ=255)                atccagcgaggcgggccgcaggctatcgaggggcaggcgtgcatcgcggcgcatcaccaccgagcgcagaaagcgttgcaGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACt                                                                                                                                                    <  6:235793‑M1/51‑1 (MQ=255)                atccagcgaggcgggccgcaggctatcgaggggcaggcgtgcatcgcggcgcatcaccaccgagcgcagaaagcgttgcaGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACt                                                                                                                                                    >  5:235793‑M1/81‑131 (MQ=255)                                aGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGcgccg                                                                                                                   <  8:63853/148‑1 (MQ=255)                                 ggTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGcgccgc                                                                                                                  >  5:78694/1‑148 (MQ=255)                                   tgtTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGAt                                                                                                               <  3:147593/149‑1 (MQ=255)                                        tACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACg                                                                                                          >  4:242204/1‑149 (MQ=255)                                           cGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCt                                                                                                       <  8:50056/149‑1 (MQ=255)                                              cTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGcc                                                                                                    <  8:229207/149‑1 (MQ=255)                                                    ggcggcTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGa                                                                                              <  2:103681/149‑1 (MQ=255)                                                           gggCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTg                                                                                       >  6:15102/1‑149 (MQ=255)                                                            ggCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGc                                                                                      >  5:280707/1‑149 (MQ=255)                                                                gACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGcc                                                                                  >  4:62017/1‑149 (MQ=255)                                                                        tgtgCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGc                                                                          <  7:155854/149‑1 (MQ=255)                                                                         gtgCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCATGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCt                                                                         >  1:227249/1‑149 (MQ=255)                                                                          tgCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTg                                                                        <  4:233001/149‑1 (MQ=255)                                                                            cTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCATGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGa                                                                      <  2:227249/149‑1 (MQ=255)                                                                            cTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGa                                                                      >  3:100974/1‑149 (MQ=255)                                                                            cTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGa                                                                      <  3:62017/149‑1 (MQ=255)                                                                                aTGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATc                                                                  <  6:321751/149‑1 (MQ=255)                                                                                  gAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTc                                                                            >  4:48799/1‑137 (MQ=255)                                                                                  gAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTc                                                                            <  3:48799/137‑1 (MQ=255)                                                                                    aTACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACt                                                              >  5:66792/1‑149 (MQ=255)                                                                                     tACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACtt                                                             >  8:124831/1‑149 (MQ=255)                                                                                          gttgcagtggcaacagcagatgcgcttcgtcatgcagcggcaggcgttgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTcgcg                                                         >  7:288998‑M2/57‑148 (MQ=255)                                                                                          cGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTcgcg                                                         >  5:290563/1‑148 (MQ=255)                                                                                           gCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTcgcg                                                         >  5:303439/1‑147 (MQ=255)                                                                                               agtggcaacagcagatgcgcttcgtcatgcagcggcaggcgttgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGat                                                                     <  6:235793‑M2/80‑1 (MQ=255)                                                                                               agtggcaacagcagatgcgcttcgtcatgcagcggcaggcgttgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGat                                                                     >  5:235793‑M2/52‑131 (MQ=255)                                                                                                gtggcaacagcagatgcgcttcgtcatgcagcggcaggcgttgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCg                                                                                <  6:301126‑M2/69‑1 (MQ=255)                                                                                                gtggcaacagcagatgcgcttcgtcatgcagcggcaggcgttgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCg                                                                                >  5:301126‑M2/51‑119 (MQ=255)                                                                                                  GGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTg                                                <  7:288181‑M1/149‑1 (MQ=255)                                                                                                   GCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTg                                                >  5:53488‑M1/1‑148 (MQ=255)                                                                                                     AACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTc                                                            <  8:60650‑M1/134‑1 (MQ=255)                                                                                                     AACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTc                                                            >  7:60650‑M1/1‑134 (MQ=255)                                                                                                     AACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGcc                                              <  7:77657‑M1/148‑1 (MQ=255)                                                                                                                ccGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCagg                                  <  8:288181/149‑1 (MQ=255)                                                                                                                   cTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCa                                    <  3:113250/144‑1 (MQ=255)                                                                                                                   cTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCa                                    >  4:113250/1‑144 (MQ=255)                                                                                                                      cATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCaggcaaggc                            <  6:35801/149‑1 (MQ=255)                                                                                                                       aTGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCaggcaaggca                           >  6:223657/1‑149 (MQ=255)                                                                                                                          aCGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACgc                        <  5:15102/149‑1 (MQ=255)                                                                                                                          aCGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACgc                        <  6:66792/149‑1 (MQ=255)                                                                                                                                       gttgttgccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCcgc           <  8:288998‑M2/138‑1 (MQ=255)                                                                                                                                             gccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTg      <  6:290563‑M2/143‑1 (MQ=255)                                                                                                                                              ccacTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGc    >  3:61822‑M2/5‑149 (MQ=255)                                                                                                                                                acTGCAACGCCTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGccc  >  7:2114‑M2/3‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTGCTGGAGCAAGGCCGGCCAGCCTGTATTCAGGTGTTCTACCGCCTGCAGGGCGGCTGGGCCGACGTGTATGTGCTGGATGAATACAACGCATTGTGGCAACAACGCCTGCCGCTGCATGACGAAGCGCATCTGCTGTTGCCACTGCAACGCTTTCTGCGCTCGGTGGTGATGCGCCGCGATGCACGCCTGCCCCTCGATAGCCTGCGGCCCGCCTCGCTGGATATCCACTTCGCGCAGCTGTTGCCCACCGGCCCAGGCAAGGCACGCAGCATCGAGCCGCGCCTGGCCC  >  NC_002947/5958835‑5959126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.