New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5992446 =	53 (1.030)	3 (0.060)	3/246	NT	6.2%	coding (437/1263 nt)	opdB	proline‑specific outer membrane porin D
	?	NC_002947	5992516 =	40 (0.820)					coding (507/1263 nt)	opdB	proline‑specific outer membrane porin D

CGGTTGTGGGTGGTCGCGCCGTAGCCGCTGAAGTCGTCGTGGGTGGAGCTGTTGTCCTGGTTGTTGAAGGCAGTGAAACGCCCGGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGTGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5992599‑5992446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGC  >  NC_002947/5992516‑5992662                                                                                                                                                                                                                                                                                                               CGGTTGTGGGTGGTCGCGCCGTAGCCGCTGAAGTCGTCGTGGGTGGAGCTGTTGTCCTGGTTGTTGAAGGCAGTGAAACGCCCGGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGTG                                                                                                                                                          <  4:34645/149‑1                           GCTGAAGTCGTCGTGGGTGGAGCTGTTGTCCTGGTTGTTGAAGGCAGTGAAACGCCCGGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGT                                                                                                                                                           <  1:7506/122‑1                           GCTGAAGTCGTCGTGGGTGGAGCTGTTGTCCTGGTTGTTGAAGGCAGTGAAACGCCCGGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGT                                                                                                                                                           >  2:7506/1‑122                                                                                   CGGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACC                                                                         >  2:226199/1‑148                                                                                    GGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCA                                                                       >  6:43873/1‑149                                                                                                                      TCCACCCACCAGCCGGTGGCGTATTCCGGGTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTT                                      <  5:43873/148‑1                                                                                                                                                     GCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTG       >  8:228119/1‑148                                                                                                                                                     GCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTT                    <  7:282187/135‑1                                                                                                                                                     GCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTT                    >  8:282187/1‑135                                                                                                                                                         GCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGC  >  4:90401/1‑149                                                                                                                                                                                                                                                                                                               CGGTTGTGGGTGGTCGCGCCGTAGCCGCTGAAGTCGTCGTGGGTGGAGCTGTTGTCCTGGTTGTTGAAGGCAGTGAAACGCCCGGCCTGCAGGCGCCAGTCGGGCTGGTCGGTGTTTTCCACCCACCAGCCGGTGGCGTATTCCGGGTGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5992599‑5992446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGC  >  NC_002947/5992516‑5992662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.