New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5992446 =	53 (1.030)	3 (0.060)	3/246	NT	6.2%	coding (437/1263 nt)	opdB	proline‑specific outer membrane porin D
	?	NC_002947	5992516 =	40 (0.820)					coding (507/1263 nt)	opdB	proline‑specific outer membrane porin D

AAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCG  >  NC_002947/5992368‑5992664                                                                                                                                                     |                                                                                                                                                     tgggtggtcgcgccgtagccgctgaagtcgtcgtgggtggagctgttgtcctggttgttgaaggcagtgaaacgcccgGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGcc                                                                                                                                                      >  6:43873‑M1/79‑149 (MQ=255)  aaTGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCg                                                                                                                                                     <  4:304693/149‑1 (MQ=255)   ggtggtcgcgccgtagccgctgaagtcgtcgtgggtggagctgttgtcctggttgttgaaggcagtgaaacgcccgGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCg                                                                                                                                                     >  2:226199‑M1/77‑148 (MQ=255)         ttAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGttt                                                                                                                                              <  2:267407/149‑1 (MQ=255)         tgaGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCGGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGACGttt                                                                                                                                              <  7:295523/147‑1 (MQ=255)            ggCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCa                                                                                                                                            <  8:222394/148‑1 (MQ=255)            ggCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCAc                                                                                                                                           <  8:209291/149‑1 (MQ=255)             gCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACt                                                                                                                                          <  1:215190/149‑1 (MQ=255)             gCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACt                                                                                                                                          <  2:274824/149‑1 (MQ=255)                 cacCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCt                                                                                                                                      <  5:159258/149‑1 (MQ=255)                      aaCTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTcaa                                                                                                                                  >  5:177951/1‑148 (MQ=255)                           cgcTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCa                                                                                                                            <  7:157753/149‑1 (MQ=255)                            gcTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAg                                                                                                                           <  5:242291/149‑1 (MQ=255)                                tGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGa                                                                                                                         <  2:45333/147‑1 (MQ=255)                                  gCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGTCTTCAACAACCAGGacaa                                                                                                                      <  6:313918/148‑1 (MQ=255)                                          atgGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTcca                                                                                                              <  1:148063/148‑1 (MQ=255)                                               ggAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCtcg                                                                                                        >  3:268027/1‑149 (MQ=255)                                               ggAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCtcg                                                                                                        >  3:272586/1‑149 (MQ=255)                                                      ccGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACtt                                                                                                 <  5:70832/149‑1 (MQ=255)                                                          tgtTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGc                                                                                             >  2:301495/1‑149 (MQ=255)                                                            ttCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCg                                                                                            <  2:164425/148‑1 (MQ=255)                                                                           aaaCGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACg                                                                                      >  5:56688/1‑139 (MQ=255)                                                                           aaaCGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACg                                                                                      <  6:56688/139‑1 (MQ=255)                                                                             cggcctgcaggcgccagtcgggctggtcggtgttttccacccaccagccggtggcgtattccgggtgcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGaccacc                                                                           >  2:226199‑M2/73‑148 (MQ=255)                                                                              ggcctgcaggcgccagtcgggctggtcggtgttttccacccaccagccggtggcgtattccgggtgcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGAccaccca                                                                         >  6:43873‑M2/72‑149 (MQ=255)                                                                                    CACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCg                                                                   <  4:34645‑M1/149‑1 (MQ=255)                                                                                     ACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGc                                                                                             >  2:7506‑M1/1‑122 (MQ=255)                                                                                     ACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGc                                                                                             <  1:7506‑M1/122‑1 (MQ=255)                                                                                            aTACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCa                                                           <  5:92625/149‑1 (MQ=255)                                                                                                gCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCt                                                       <  3:34645/149‑1 (MQ=255)                                                                                                gCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCt                                                       >  2:171612/1‑149 (MQ=255)                                                                                                  cACCGGCTGGTGGGTGGATAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTgg                                                     >  4:280759/1‑149 (MQ=255)                                                                                                  cACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGCCCACCCACAACCGGGCCATCAGCCTgg                                                     >  6:87035/1‑149 (MQ=255)                                                                                                   aCCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGc                                                    <  6:177951/149‑1 (MQ=255)                                                                                                        cTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCTCGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTg                                               <  4:272586/149‑1 (MQ=255)                                                                                                        cTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCTCGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTg                                               <  4:268027/149‑1 (MQ=255)                                                                                                            tgggtggAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGTACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCAc                                           <  6:132109/149‑1 (MQ=255)                                                                                                               gtggATAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCtt                                        <  3:280759/149‑1 (MQ=255)                                                                                                                tccacccaccagccggtggcgtattccgggtgcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCtt                                        <  5:43873‑M2/111‑1 (MQ=255)                                                                                                                     aaCACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCAcc                                  <  1:301495/149‑1 (MQ=255)                                                                                                                      acacCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCAcc                                  >  5:254217/1‑148 (MQ=255)                                                                                                                        acCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGAccaccc                                                                          <  1:130742/106‑1 (MQ=255)                                                                                                                        acCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGAccaccc                                                                          >  2:130742/1‑106 (MQ=255)                                                                                                                        acCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCaa                               >  4:218527/1‑149 (MQ=255)                                                                                                                            aCCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACggg                           >  6:241879/1‑149 (MQ=255)                                                                                                                                  ccGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTc                     >  3:124727/1‑149 (MQ=255)                                                                                                                                     aCTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACTGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGgc                  <  1:218676/149‑1 (MQ=255)                                                                                                                                     aCTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGgc                  >  4:41233/1‑149 (MQ=255)                                                                                                                                        ggCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGcgcc               >  4:299001/1‑149 (MQ=255)                                                                                                                                         gcgcCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGcgccg              <  1:171612/149‑1 (MQ=255)                                                                                                                                         gcgcCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGcgcc               <  3:299001/148‑1 (MQ=255)                                                                                                                                               gcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGtt                      <  7:282187‑M2/129‑1 (MQ=255)                                                                                                                                               gcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGtt                      >  8:282187‑M2/7‑135 (MQ=255)                                                                                                                                               gcaggcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTg         >  8:228119‑M2/7‑148 (MQ=255)                                                                                                                                                   gcCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGc    >  4:90401‑M2/3‑149 (MQ=255)                                                                                                                                                     cGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCg  <  4:124727/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGCCTGCAGGCCGGGCGTTTCACTGCCTTCAACAACCAGGACAACAGCTCCACCCACGACGACTTCAGCGGCTACGGCGCGACCACCCACAACCGGGCCATCAGCCTGGCCGGTGCCACCTTCGCACCCAACGGGCCGTTCGGCGCCGCACTGTATGCCG  >  NC_002947/5992368‑5992664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.