New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6002866	49 (0.950)	4 (0.080)	4/240	NT	9.3%	coding (1071/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
	?	NC_002947	= 6002960	33 (0.690)					coding (977/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase

TGGCACTTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6002710‑6002866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtcggccCGCTGATCGACAAGCAGTCGTTCGACGCCATGCAGGGCGCACTGGCCAAGGCCCGCGACGAAGGTGGCCAGGTATTCGGTGGCGAGCGTCAGCTGGCCGACCAGTACCCGAACGCCTACTACGTTTCGCCAGCCATTGC  <  NC_002947/6002960‑6002822                                                                                                                                                                                                                                                                                                          TGGCACTTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGTCGAAACGTAGTAGGCGTTCGGGTAC                                                                                                                                                      <  4:212051/148‑1     ACTTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGTACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTC                                                                                                                                                 >  1:93886/1‑149     ACTTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTC                                                                                                                                                 >  1:277195/1‑149       TTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTG                                                                                                                                                    >  1:254944/1‑144       TTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTG                                                                                                                                                    <  2:254944/144‑1       TTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCAATTCAGCAATCGCTTGCGAAACGTAGTAGCCGTTCGGGTACTCGTCGG                                                                                                                                               >  4:164776/1‑149         CGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGC                                                                                                                                              >  2:50574/1‑148         CGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGC                                                                                                                                              >  3:133511/1‑148                CAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGG                                                                                                                                                   <  3:148363/136‑1                CAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGG                                                                                                                                                   >  4:148363/1‑136                                                                                    GCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCCGCTGATCGACAAGCAGTCGTTCGACGCCATGCAGGGCGCACTGGCCAAGGCCCGCGACGAAGGTGGCCAGGTAT                                                                  >  6:168642/1‑149                                                                                                           ATTTCTGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGATCGACAAGCAGTAGTTCGACTCCATGCAGGGCGCACTGTCCAAGGCCCTCGACGAAGGTGGCCAGGTATTCGTTGGCGAGCTTCAGCTGGCC                                           <  4:39675/149‑1                                                                                                               CAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCCGCTGATCGACAAGCAGTCGTTCGACGCCATGCAGGGCGCACTGGCCAAGGCCCGCGACGAAGGTGGCCAGGTATTCGGTGGCGAGCGTCAGCTGGCCGAC                                        <  5:168642/148‑1                                                                                                                AGCAATGGCTGGCGAAACGTAGTAGGCGTTCGCGTACTGGTCGGCCCGCTGATCGACAAGCAGTCGTTCGACGCCATGCAGGGCGCACTGGCCAAGGCCCGCGACGAAGGTGGCCAGGTATTCGGTGGCGAGCGTCAGCTGGCCGACC                                       <  2:141281/148‑1                                                                                                                                                    CTGGTCGGCCCGCTGATCGACAAGCAGTCGTTCGACGCCATGCAGGGCGCACTGGCCAAGGCCCGCGACGAAGGTGGCCAGGTATTCGGTGGCGAGCGTCAGCTGGCCGACCAGTACCCGAACGCCTACTACGTTTCGCCAGCCATTGC  >  8:178052/1‑149                                                                                                                                                                                                                                                                                                          TGGCACTTCGTTGTTCAGGCGCAGGGCCTCCTCGAAGTCGTCGTAGGCCAGCACGTACAGGATCGGTGCGAAGGTTTCGTGGCGCACCACGTCACTTTGCGCCGGCATTTCAGCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6002710‑6002866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtcggccCGCTGATCGACAAGCAGTCGTTCGACGCCATGCAGGGCGCACTGGCCAAGGCCCGCGACGAAGGTGGCCAGGTATTCGGTGGCGAGCGTCAGCTGGCCGACCAGTACCCGAACGCCTACTACGTTTCGCCAGCCATTGC  <  NC_002947/6002960‑6002822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.