New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6002866	49 (0.950)	4 (0.080)	4/240	NT	9.3%	coding (1071/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
	?	NC_002947	= 6002960	33 (0.690)					coding (977/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase

GCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGCCGA  >  NC_002947/6002822‑6003108                                                                                                                                             |                                                                                                                                                     gCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGggccgaccag                                                                                                                                            >  8:178052‑M2/1‑139 (MQ=255)        ctggcGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCt                                                                                                                                     >  8:258393/1‑149 (MQ=255)              aaaCGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGt                                                                                                                               <  1:133617/149‑1 (MQ=255)               aaCGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGCAAGGCCTTGGCCAGTGCCCCCTGAATGGCGTCGAACGACTGCTTTACGATCCGCGGCCCGACCTGGTTGTATTTACGt                                                                                                                               >  1:266826/1‑149 (MQ=255)                    agtagGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCTGACGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTc                                                                                                                          >  1:94748/1‑149 (MQ=255)                          cGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCTAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATg                                                                                                                   <  6:186276/149‑1 (MQ=255)                           gTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTg                                                                                                                              >  2:260482/1‑137 (MQ=255)                           gTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTg                                                                                                                              <  1:260482/137‑1 (MQ=255)                              cGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATgcgc                                                                                                                <  8:86497/148‑1 (MQ=255)                               gggTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCa                                                                                                               <  1:50574/148‑1 (MQ=255)                               gggTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCa                                                                                                               <  4:303315/148‑1 (MQ=255)                               gggTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCa                                                                                                               >  3:303315/1‑148 (MQ=255)                                    cTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGc                                                                                                         <  6:21449/149‑1 (MQ=255)                                      ggTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGggccgaccagtacgcgaacgcctactacgtttcgccagccattgct                                                                                                        <  2:141281‑M2/148‑47 (MQ=255)                                      ggTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCg                                                                                                       >  8:153201/1‑149 (MQ=255)                                       gTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGggccgaccagtacccgaacgcctactacgtttcgccagccattgctg                                                                                                       <  5:168642‑M2/148‑48 (MQ=255)                                        tCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGGGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTa                                                                                                     <  7:298166/149‑1 (MQ=255)                                          ggCCAGCTGAAGCTCGCCAACGAATACCTGGCCACCT‑TCGTCGA‑GGGCCTTGGACAGTGCGCCCTGCATGGAGTCGAACTACTGCTTGTCGATCAGCTggccgaccagtacccgaacgcctactacgtttcgccagccattgcagaaat                                                                                                   <  4:39675‑M2/149‑52 (MQ=255)                                               gCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCt                                                                                              <  2:94748/149‑1 (MQ=255)                                                   aCGCTCGCCACCGAATACCTGGCCACCT‑GCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGa                                                                                          <  2:266826/149‑1 (MQ=255)                                                         gCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCgg                                                                                     <  5:105889/148‑1 (MQ=255)                                                           cACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGc                                                                                   >  5:60718/1‑148 (MQ=255)                                                               gAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGtt                                                                                                                                         <  2:87936/90‑1 (MQ=255)                                                               gAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGtt                                                                                                                                         >  1:87936/1‑90 (MQ=255)                                                                 aTACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGggccgaccagtacccgaacgcctactacgtttcgccagccattgctgaaatgccggcgcaaagtgacgtggtgc                                                                            >  6:168642‑M2/1‑75 (MQ=255)                                                                      tGGCCACCT‑TCCTCGA‑GGGCCTTGGCCAGTGAGCCCTGCATGGCGTAGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGACTTTACGTGGGTCGCCGATCCGCACTATGCCGTAGCCGGCATTGACGCGGGCAACCACTTCGTc                                                                       >  2:58926/1‑149 (MQ=255)                                                                            ccT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGAACAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGAAGGCGGCATTGACGCTGGCAACCACTTCGTCCTTGAt                                                                 >  8:280009/1‑149 (MQ=255)                                                                             cT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATc                                                                <  7:153201/149‑1 (MQ=255)                                                                                   tcgC‑TGGGCTTGGCCTTTGCGAGCTGCATGGTGTCGAACGACTGCTTGTTGTTTATCGGGCCGACCAGGTTGTCTTTACTTGGGTCGCCGATGCGCACTTTGCCGTAGTCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAAc                                                            <  2:290926/148‑1 (MQ=255)                                                                                   tcgC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGAcgcg                                                                                      >  1:193718/1‑122 (MQ=255)                                                                                   tcgC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGAcgcg                                                                                      <  2:193718/122‑1 (MQ=255)                                                                                   tcgC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACg                                                           >  4:27046/1‑149 (MQ=255)                                                                                                  cAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACt                                                                            <  4:76672/118‑1 (MQ=255)                                                                                                  cAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACt                                                                            >  3:76672/1‑118 (MQ=255)                                                                                                            tGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGggt                                   >  8:115545/1‑149 (MQ=255)                                                                                                                           gACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTg                                                                                                          <  2:209008/63‑1 (MQ=255)                                                                                                                           gACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTg                                                                                                          >  1:209008/1‑63 (MQ=255)                                                                                                                                 ttGTAGATCATCGGGCAGACCAGTTAGTCTTTACGTGGGTCGCCGATGCGCACTTTCCCGTAGGCGGATTAGCCGCGGGCAACCAATTCGTCCTTGATCGAACGCTTCACGATCAGGCGTCGAAGGGTGGTGCAAAGCTGTCAGGCAGt              >  6:105509/1‑149 (MQ=255)                                                                                                                                   gTCGATCAGCGGGCCGAACAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGTCGCAGGGTTGTGCAACGCTGGCCGGCAGTg             <  7:280009/148‑1 (MQ=255)                                                                                                                                    tCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAATGCTGGCCGGCAGTGcc           >  5:95234/1‑149 (MQ=255)                                                                                                                                          aGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGc     >  2:60911/1‑149 (MQ=255)                                                                                                                                           gCGGGCCGACGAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGcc    <  1:58926/149‑1 (MQ=255)                                                                                                                                           gCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGcc    <  7:258393/149‑1 (MQ=255)                                                                                                                                             gggCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGCCga  <  5:105509/149‑1 (MQ=255)                                                                                                                                             gggCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGCCga  <  3:203674/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     GCAATGGCTGGCGAAACGTAGTAGGCGTTCGGGTACTGGTCGGCCAGCTGACGCTCGCCACCGAATACCTGGCCACCT‑TCGTCGC‑GGGCCTTGGCCAGTGCGCCCTGCATGGCGTCGAACGACTGCTTGTCGATCAGCGGGCCGACCAGGTTGTCTTTACGTGGGTCGCCGATGCGCACTTTGCCGTAGGCGGCTTTGACGCGGGCAACCACTTCGTCCTTGATCGAACGGTGCACGATCAGGCGGCGCAGGGTGGTGCAACGCTGGCCGGCAGTGCCGACAGCCGA  >  NC_002947/6002822‑6003108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.