New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 316761 = | 53 (1.030) | 3 (0.060) | 3/246 | NT | 5.9% | coding (1170/1407 nt) | dctD‑I | C4‑dicarboxylate transport transcriptional regulator |
? | NC_002947 | 316840 = | 45 (0.920) | coding (1091/1407 nt) | dctD‑I | C4‑dicarboxylate transport transcriptional regulator |
TACCCAGTGCTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGG > NC_002947/316619‑316905 | cgctgcgtattccgccactgcgtgaacgcggcgacgacatattggtgttgttccagcatttcgccgatgctgccagccaacgtcatggcctgtcgccgcatgcgctgcaacccgcgcaacgcgccctgctgctgcgtcatgaCTGTCCa > 6:281807‑M1/143‑149 (MQ=255) cAGTGCTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATc > 5:94523/1‑147 (MQ=255) gTGCTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGGTTGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGt < 1:234332/149‑1 (MQ=255) gTGCTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGt > 7:191725/1‑149 (MQ=255) cTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGc > 1:261354/1‑148 (MQ=255) cTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAAATGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGc < 2:84282/148‑1 (MQ=255) cGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGc > 5:43640/1‑149 (MQ=255) ccAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTcc < 1:246147/149‑1 (MQ=255) cAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCGGCGAACGTTCGAATTGCTGAACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTc > 1:99445/1‑147 (MQ=255) cAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTc > 4:114703/1‑147 (MQ=255) cAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTc < 1:52165/147‑1 (MQ=255) cAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTc > 2:52165/1‑147 (MQ=255) gCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGc > 4:144015/1‑149 (MQ=255) gCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGc > 1:285387/1‑149 (MQ=255) aGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGaaa < 1:37602/149‑1 (MQ=255) ccGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACg < 5:14126/149‑1 (MQ=255) tgtgGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTc < 2:49035/149‑1 (MQ=255) tgGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTcgg < 1:320636/149‑1 (MQ=255) tgGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTcg < 2:79617/148‑1 (MQ=255) gCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTcggcg < 4:4172/149‑1 (MQ=255) ggCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCggcggc < 2:261354/147‑1 (MQ=255) ttCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTa < 4:300489/149‑1 (MQ=255) cggcggCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGTCGAAACGCTAGGCGGCTTTCTGTAGc > 2:235757/1‑149 (MQ=255) cggcgATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCa > 4:30467/1‑99 (MQ=255) cggcgATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCa < 3:30467/99‑1 (MQ=255) gATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAg > 7:137703/1‑102 (MQ=255) gATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAg < 8:137703/102‑1 (MQ=255) ttcgccgatgctgccagccaacgtcatggcctgtcgccgcatgcgctgcaacccgcgcaacgcgccctgctgctgcgtcatgaCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGAc < 4:221761‑M1/66‑1 (MQ=255) aTCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAACTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGAc < 3:23302/149‑1 (MQ=255) gCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTg > 1:60349/1‑149 (MQ=255) ccagccaacgtcatggcctgtcgccgcatgcgctgcaacccgcgcaacgcgccctgctgctgcgtcatgaCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCa > 5:124424‑M1/71‑148 (MQ=255) caacgtcatggcctgtcgccgcatgcgctgcaacccgcgcaacgcgccctgctgctgcgtcatgaCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATg > 3:221761‑M1/66‑149 (MQ=255) tCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACg > 6:141755/1‑149 (MQ=255) tCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACg > 4:222115/1‑149 (MQ=255) aCCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACgcag < 3:144015/149‑1 (MQ=255) ccTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACgcag > 1:246092/1‑148 (MQ=255) tGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAgg > 7:237477/1‑87 (MQ=255) tGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAgg < 8:237477/87‑1 (MQ=255) ttCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACgcagcagca < 6:94523/149‑1 (MQ=255) gCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAgg < 6:224788/148‑1 (MQ=255) gTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAgg < 6:73289/142‑1 (MQ=255) gTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAgg > 5:73289/1‑142 (MQ=255) cGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGc < 2:180581/98‑1 (MQ=255) cGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGc > 1:180581/1‑98 (MQ=255) cGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGcgcg > 5:22343/1‑149 (MQ=255) cTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCggg > 1:268667/1‑149 (MQ=255) tGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGt < 2:285387/149‑1 (MQ=255) cATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTg > 4:257929/1‑147 (MQ=255) tGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAgc > 6:33588/1‑149 (MQ=255) gcgcTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCa > 2:203415/1‑149 (MQ=255) ggCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATgcggcaatc < 6:172544/149‑5 (MQ=255) tgcCGAGGGTGCCTGGCCATCCAGTGCCAGCTTCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCAt > 4:58614/1‑149 (MQ=255) ccGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTCGCAGCGCATGCGGCGACAGGCCATGa > 8:268365/1‑149 (MQ=255) cGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGAc < 2:268667/149‑1 (MQ=255) aGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGt < 2:99445/149‑1 (MQ=255) gggTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGtt < 8:104217/149‑1 (MQ=255) gggTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTCGCAGCGCATGCGGCGACAGGCCATGACGtt < 7:268365/149‑1 (MQ=255) ggTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTtg < 3:222115/149‑1 (MQ=255) gTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTtgg < 6:43640/149‑1 (MQ=255) | TACCCAGTGCTTCGGCCAGGCTCCGCATGGAGCCGTGTGGCTGGGCCAGTTCGGCGGCGATCAGCGAACGTTCGAATTGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGG > NC_002947/316619‑316905 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |