New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	316761 =	53 (1.030)	3 (0.060)	3/246	NT	5.9%	coding (1170/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	316840 =	45 (0.920)					coding (1091/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator

TGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGTGGCGGAATACGCAGCG  >  NC_002947/316696‑316981                                                                                                                                                 |                                                                                                                                              caacgtcatggcctgtcgccgcatgcgctgcaacccgcgcaacgcgccctgctgctgcgtcatgaCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATg                                                                                                                                           >  3:221761‑M1/66‑149 (MQ=255)    tCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACg                                                                                                                                        >  6:141755/1‑149 (MQ=255)    tCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACg                                                                                                                                        >  4:222115/1‑149 (MQ=255)       aCCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACgcag                                                                                                                                     <  3:144015/149‑1 (MQ=255)        ccTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACgcag                                                                                                                                     >  1:246092/1‑148 (MQ=255)            ttCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACgcagcagca                                                                                                                                <  6:94523/149‑1 (MQ=255)               gCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAgg                                                                                                                              <  6:224788/148‑1 (MQ=255)                     gTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAgg                                                                                                                              <  6:73289/142‑1 (MQ=255)                     gTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAgg                                                                                                                              >  5:73289/1‑142 (MQ=255)                          cGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGcgcg                                                                                                                  >  5:22343/1‑149 (MQ=255)                            cTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCggg                                                                                                                >  1:268667/1‑149 (MQ=255)                             tGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGt                                                                                                               <  2:285387/149‑1 (MQ=255)                                 cATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTg                                                                                                             >  4:257929/1‑147 (MQ=255)                                   tGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAgc                                                                                                         >  6:33588/1‑149 (MQ=255)                                      gcgcTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCa                                                                                                      >  2:203415/1‑149 (MQ=255)                                                ggCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATgcggcaatc                                                                                            <  6:172544/149‑5 (MQ=255)                                                      tgcCGAGGGTGCCTGGCCATCCAGTGCCAGCTTCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCAt                                                                                      >  4:58614/1‑149 (MQ=255)                                                        ccGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTCGCAGCGCATGCGGCGACAGGCCATGa                                                                                    >  8:268365/1‑149 (MQ=255)                                                         cGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGAc                                                                                   <  2:268667/149‑1 (MQ=255)                                                           aGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGt                                                                                 <  2:99445/149‑1 (MQ=255)                                                            gggTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGtt                                                                                <  8:104217/149‑1 (MQ=255)                                                            gggTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTCGCAGCGCATGCGGCGACAGGCCATGACGtt                                                                                <  7:268365/149‑1 (MQ=255)                                                             ggTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTtg                                                                               <  3:222115/149‑1 (MQ=255)                                                             catgactggccaggcaacgtccgcgagctacagaacgccgccgagcgtttcgcccttggcctggagctggcactggatggccagTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTtg                                                                               >  3:221761‑M2/85‑149 (MQ=255)                                                              gTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTtgg                                                                              <  6:43640/149‑1 (MQ=255)                                                                   tggccaggcaacgtccgcgagctacagaacgccgccgagcgtttcgcccttggcctggagctggcactggatggccagTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTtggctgg                                                                          >  5:124424‑M2/79‑148 (MQ=255)                                                                     GCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGgca                                                                        >  3:114703‑M1/1‑148 (MQ=255)                                                                        ATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCAt                                                                    <  7:155450‑M1/149‑1 (MQ=255)                                                                        ATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCAAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCAt                                                                    <  8:104327‑M1/149‑1 (MQ=255)                                                                              tGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGa                                                              <  5:141755/149‑1 (MQ=255)                                                                               gtccgcgagctacagaacgccgccgagcgtttcgcccttggcctggagctggcactggatggccagTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGaa                                                             <  4:221761‑M2/83‑1 (MQ=255)                                                                                ccAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGgca                                                                        >  5:148537/1‑137 (MQ=255)                                                                                ccAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGgca                                                                        <  6:148537/137‑1 (MQ=255)                                                                                ccAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGaaa                                                            <  2:60349/149‑1 (MQ=255)                                                                                ccAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGaaa                                                            <  5:33588/149‑1 (MQ=255)                                                                                ccAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGaaa                                                            >  1:261339/1‑149 (MQ=255)                                                                                 cAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAAt                                                           <  3:257929/149‑1 (MQ=255)                                                                                   gCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGc                                                         <  1:203415/149‑1 (MQ=255)                                                                                   gCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGc                                                         <  2:246092/149‑1 (MQ=255)                                                                                     gccAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGAAGTTGCCTGGCCCTGCATTCAGCAGCATCATGGCGCGTTTCGCGGGTTGCAGCGCATGCGGCGACATGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTg                                                       <  1:235757/148‑1 (MQ=255)                                                                                       cAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTgg                                                      >  8:228286/1‑148 (MQ=255)                                                                                           ccAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGaacaa                                                 >  3:274595/1‑149 (MQ=255)                                                                                                  cGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAat                                          <  2:261339/149‑1 (MQ=255)                                                                                                                   ttCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGtt                          >  8:200991/1‑148 (MQ=255)                                                                                                                        ttgCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACg                      <  8:155450/145‑1 (MQ=255)                                                                                                                        tAGCTCGCGGACGTTGCCTGGCAAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACg                      <  7:104327/147‑1 (MQ=255)                                                                                                                          gCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGt                  >  3:271221/1‑149 (MQ=255)                                                                                                                          gCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGt                  >  1:41894/1‑149 (MQ=255)                                                                                                                            tCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCg                                                                  <  1:321216/99‑1 (MQ=255)                                                                                                                            tCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCg                                                                  >  2:321216/1‑99 (MQ=255)                                                                                                                              gcgGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGTGGCg              <  7:200991/149‑1 (MQ=255)                                                                                                                              gcgGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACAAATATGTCGTCGCCGCGTTCACGCAGTGGCg              >  8:116925/1‑149 (MQ=255)                                                                                                                                     ttGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGGTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGTGGCGGAATACg       <  6:22343/149‑1 (MQ=255)                                                                                                                                         cTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGTGGCGGAATACGCAgc   >  3:57546/1‑149 (MQ=255)                                                                                                                                          tggacagTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGTGGCGGAATACGCAgcg  >  6:281807‑M2/8‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                              TGCTCGACCTGTTCGCTGAGGTTGCCGCTGAGCATGGGCGCTGCCGGGGCTGCTGCCGAGGGTGCCTGGCCATCCAGTGCCAGCTCCAGGCCAAGGGCGAAACGCTCGGCGGCGTTCTGTAGCTCGCGGACGTTGCCTGGCCAGTCATGACGCAGCAGCAGGGCGCGTTGCGCGGGTTGCAGCGCATGCGGCGACAGGCCATGACGTTGGCTGGCAGCATCGGCGAAATGCTGGAACAACACCAATATGTCGTCGCCGCGTTCACGCAGTGGCGGAATACGCAGCG  >  NC_002947/316696‑316981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.