New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	673259 =	43 (0.830)	4 (0.080)	4/248	NT	7.6%	coding (261/777 nt)	PP_0574	LuxR family transcriptional regulator
	?	NC_002947	673325 =	56 (1.140)					coding (195/777 nt)	PP_0574	LuxR family transcriptional regulator

TCCAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGTTGA  >  NC_002947/673125‑673405                                                                                                                                       |                                                                                                                                                    tCCAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGt                                                                                                                                       >  8:195390/1‑149 (MQ=255)   cAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCAATCGGCTTATGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGACCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTgc                                                                                                                                     >  5:154410/1‑149 (MQ=255)               ttcttGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGt                                                                                                                         >  3:313067/1‑149 (MQ=255)                   tcgaaaccaagggctatgcctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGAt                                                                                                                     <  4:284297‑M1/33‑1 (MQ=255)                          ggacgCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTc                                                                                                              <  6:304460/149‑1 (MQ=255)                            acgCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTc                                                                                                              >  1:98532/1‑147 (MQ=255)                               gctatgcctgcgttacagccctctcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGgc                                                                                                         <  5:248313‑M1/45‑1 (MQ=255)                                cTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGgcg                                                                                                        >  6:303250/1‑149 (MQ=255)                                   ccAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGgcgc                                                                                                       <  2:22551/147‑1 (MQ=255)                                   ccAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATAAAAGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGgcgcg                                                                                                      >  1:274455/1‑148 (MQ=255)                                        agTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAg                                                                                                >  8:200947/1‑149 (MQ=255)                                             atcaAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑Ga                                                                                          <  3:262264/149‑1 (MQ=255)                                              tcaAGGTCCATCGGCTTCTGGTAGTAATCGGCTAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCTCGCCCTGTCAACATGATGGCGTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GAt                                                                                         <  6:154410/149‑1 (MQ=255)                                               caAGGTCCTTCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATg                                                                                        >  5:151867/1‑149 (MQ=255)                                                    tCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCGCGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATc                                                                                   >  5:215653/1‑149 (MQ=255)                                                      tcaaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATc                                                                                   >  6:248313‑M1/82‑147 (MQ=255)                                                      cATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCaa                                                                                                            >  3:25919/1‑123 (MQ=255)                                                      cATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCaa                                                                                                            <  4:25919/123‑1 (MQ=255)                                                        aaccgacgaagccatcgagcactatgtggcagacccgaccatcggcttgctcatctgtgacctgcacatgcccgatcggGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATcc                                                                                  >  3:284297‑M1/80‑146 (MQ=255)                                                                  gtagtaATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCATCTC‑GATGCCATCCCGATCGGGCAt                                                                       <  7:200947/147‑1 (MQ=255)                                                                            gCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCt                                                                                                                <  5:192379/97‑1 (MQ=255)                                                                            gCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCt                                                                                                                >  6:192379/1‑97 (MQ=255)                                                                              aaaaCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTca                                                             >  2:224877/1‑145 (MQ=255)                                                                               aaaCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGAt                                                        <  5:140926/149‑1 (MQ=255)                                                                               aaaCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGAt                                                        <  2:98532/149‑1 (MQ=255)                                                                                 aCCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTCAGATGCCATCCCGATCGGGCATGTGCAGGTCACAGATg                                                       <  1:224877/149‑1 (MQ=255)                                                                                   cTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAg                                                     >  5:135854/1‑148 (MQ=255)                                                                                     tCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTcac                                                            >  7:197268/1‑139 (MQ=255)                                                                                     tCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTcac                                                            <  8:197268/139‑1 (MQ=255)                                                                                      cgcgTATCGCCCGGATCAAGTCCTGTTTCTCGGCGCGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCa                                                   <  6:215653/147‑1 (MQ=255)                                                                                       gcgTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGt                                                                                                                         >  8:269305/1‑77 (MQ=255)                                                                                       gcgTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGt                                                                                                                         <  7:269305/77‑1 (MQ=255)                                                                                       gcgTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGc                                                <  7:195390/149‑1 (MQ=255)                                                                                              gCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGt                                         >  6:215435/1‑149 (MQ=255)                                                                                               cccGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTc                                        >  2:14823/1‑149 (MQ=255)                                                                                                   gATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGt                                    >  6:166465/1‑149 (MQ=255)                                                                                                     tCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCt                                  >  6:25940/1‑149 (MQ=255)                                                                                                       aaGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGc                                <  5:215435/149‑1 (MQ=255)                                                                                                            cTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCcaca                            >  2:85453/1‑148 (MQ=255)                                                                                                               tttCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAg                         <  2:309740/148‑1 (MQ=255)                                                                                                               tttCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGt                        >  2:172693/1‑149 (MQ=255)                                                                                                                  ctcGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCt                     >  6:270663/1‑149 (MQ=255)                                                                                                                  ctcGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCt                     >  6:275103/1‑149 (MQ=255)                                                                                                                    cGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTc                    >  2:150881/1‑148 (MQ=255)                                                                                                                      gCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGAt                 >  6:239597/1‑149 (MQ=255)                                                                                                                      gCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGAt                 <  1:85453/149‑1 (MQ=255)                                                                                                                           tccTATCTACATGATGGCTTCGAACGTGCGCTGGCTGCGGTTGATTTCGTTCAATGCGCGCAGCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTGACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCt             <  4:304045/147‑1 (MQ=255)                                                                                                                                  aaCATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGt     >  4:220707/1‑149 (MQ=255)                                                                                                                                   aCATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGtt    <  5:303250/149‑1 (MQ=255)                                                                                                                                    cATGATGGCTTCGAACGTGCGCTGCCTGCCGTTGATATCCTTCAAGGCGCGCACCAGCTC‑GAAGCCATCCCGATCGGGCATGTGAAGGTCACAGATGAGCAAGCAGAAGGTCGCGAATGCCACATAGTGCTCGAAGGCt             >  3:304045/1‑139 (MQ=255)                                                                                                                                       GATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGTTga  <  4:132376‑M1/147‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                    TCCAGCAAAGCCGCTTCTTGCCGACGGACGCCTGCCAGCAGTTCATCAAGGTCCATCGGCTTCTGGTAGTAATCGGCAAAACCTTCGCGTATCGCCCGGATCAAGTCCTGTTTCTCGGCACGCCCTGTCAACATGATGGCTTCGAACGTGCGCTGGCTGCCGTTGATTTCCTTCAAGGCGCGCACCAGCTC‑GATGCCATCCCGATCGGGCATGTGCAGGTCACAGATGAGCAAGCCGATGGTCGGGTCTGCCACATAGTGCTCGATGGCTTCGTCGGTTGA  >  NC_002947/673125‑673405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.