New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	683421 =	44 (0.850)	4 (0.080)	3/250	NT	9.6%	intergenic (‑149/+19)	PP_0584/PP_0585	methyl‑accepting chemotaxis transducer/MerR family metal‑sensitive transcriptional regulator
	?	NC_002947	683473 =	33 (0.660)					coding (378/411 nt)	PP_0585	MerR family metal‑sensitive transcriptional regulator

GACGCTCCCGGAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTC  >  NC_002947/683274‑683565                                                                                                                                                    |                                                                                                                                                 gACGCTCCCGGAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGCAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGc                                                                                                                                                 <  3:314696/149‑1 (MQ=255) gACGCTCCCGGAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATg                                                                                                                                                  <  3:47329/148‑1 (MQ=255)     cTCCCGGAATTTTTGTTTTCGACACACGATGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCGCTTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCaaa                                                                                                                                             <  5:276158/149‑1 (MQ=255)     cTCCCGGAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCaaa                                                                                                                                             <  3:154412/149‑1 (MQ=255)        ccGGAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAg                                                                                                                                            <  1:140156/147‑1 (MQ=255)          ggAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAGAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGgcgc                                                                                                                                        >  5:122787/1‑149 (MQ=255)          aaggcgctggccatgcaccacatcgatgaactgaaccggcgcatcgaggagctggtgagcctgcgcgacaccctcggcgagctggtttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgg                                                                                                                                                  <  7:31407‑M1/1‑1 (MQ=255)          aaggcgctggccatgcaccacatcgatgaactgaaccggcgcatcgaggagctggtgagcctgcgcgacaccctcggcgagctggtttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgg                                                                                                                                                  >  8:31407‑M1/139‑139 (MQ=255)           gAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGcgcg                                                                                                                                       >  2:185373/1‑149 (MQ=255)                tttGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATTGCATGCAAAATGCGCCTgg                                                                                                                                    >  2:58719/1‑147 (MQ=255)                 ttGTTTTCGTCACACGAGGCTGGTAGCTACTGCATAGGCAGCCTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATATAGTCTTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCa                                                                                                                                  <  2:128871/148‑1 (MQ=255)                 ttGTTTTCGACACACGAGTCAGTTAGCATCTGCATCGGCAGCATCAGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAATGCGCGTGGCa                                                                                                                                  <  4:86716/148‑1 (MQ=255)                          acacacGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGAc                                                                                                                        <  8:96685/149‑1 (MQ=255)                           catacGAGGCAGTTAGCAACTGCATCGGCATCTTCCGGGTTTTATGAATCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTTGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGAc                                                                                                                        <  6:33589/145‑1 (MQ=255)                              acGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGAcag                                                                                                                      >  5:308994/1‑147 (MQ=255)                              acGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGAca                                                                                                                       >  6:201234/1‑146 (MQ=255)                              acGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGAca                                                                                                                       <  5:201234/146‑1 (MQ=255)                                         tgaaccggcgcatcgaggagctggtgagcctgcgcgacaccctcggcgagctggtttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAg                                                                                                         <  7:271130‑M1/42‑1 (MQ=255)                                               tGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCAt                                                                                                   >  3:148055/1‑149 (MQ=255)                                               tGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCAt                                                                                                   >  1:200987/1‑149 (MQ=255)                                                 cATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCAtt                                                                                                  <  4:148055/148‑1 (MQ=255)                                                     tcgaggagctggtgagcctgcgcgacaccctcggcgagctggtttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCa                                                                                             >  8:271130‑M1/96‑149 (MQ=255)                                                     ggCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGcc                                                                                              <  1:58719/148‑1 (MQ=255)                                                      gcagcaTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAg                                                                                            <  3:231300/149‑1 (MQ=255)                                                           aTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAGAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCtt                                                                                       <  6:122787/149‑1 (MQ=255)                                                           aTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCtt                                                                                       <  6:308994/149‑1 (MQ=255)                                                            tCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                      <  2:200987/149‑1 (MQ=255)                                                            tCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGGGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGGGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                      <  7:26918/149‑1 (MQ=255)                                                            tCCGGCTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                      <  4:20926/149‑1 (MQ=255)                                                             ccGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                      >  8:61154/1‑148 (MQ=255)                                                                    ttATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGGTACCTGCAGCGGCATTGGCCAGGTCTGTGAGGAtgg                                                                              >  6:292101/1‑147 (MQ=255)                                                                        gAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTc                                                                                         >  1:20176/1‑134 (MQ=255)                                                                        gAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTc                                                                                         <  2:20176/134‑1 (MQ=255)                                                                            ccAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTcc                                                                      >  8:77516/1‑149 (MQ=255)                                                                                             attGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGt                                                                                                                                      >  4:292449/1‑68 (MQ=255)                                                                                             attGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGt                                                                                                                                      <  3:292449/68‑1 (MQ=255)                                                                                               tttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCa                                                                                             >  6:44134‑M1/54‑107 (MQ=255)                                                                                               tttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCa                                                                                             <  5:44134‑M1/54‑1 (MQ=255)                                                                                                 gATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGCGCAGTCCGGGCGGTCGTCACCCTGACAg                                                 <  1:185373/149‑1 (MQ=255)                                                                                                        tCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGaaa                                          >  4:309192/1‑149 (MQ=255)                                                                                                                 gtGACTATTCGGTAGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGc                                 >  5:294119/1‑149 (MQ=255)                                                                                                                  tGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTg                                                                                                 >  4:97570/1‑84 (MQ=255)                                                                                                                  tGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTg                                                                                                 <  3:97570/84‑1 (MQ=255)                                                                                                                     cTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTAc                                                                                                               >  4:298882/1‑67 (MQ=255)                                                                                                                     cTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTAc                                                                                                               <  3:298882/67‑1 (MQ=255)                                                                                                                      tATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAgg                            >  2:292995/1‑149 (MQ=255)                                                                                                                        ttCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAgg                            <  1:292995/147‑1 (MQ=255)                                                                                                                             tCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTcgc                     >  8:296857/1‑149 (MQ=255)                                                                                                                                  tttGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAgg                >  4:90773/1‑149 (MQ=255)                                                                                                                                  tttGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAg                 <  7:77516/148‑1 (MQ=255)                                                                                                                                      gACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTc             <  3:309192/148‑1 (MQ=255)                                                                                                                                         aTTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCAGCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCa         >  3:269256/1‑149 (MQ=255)                                                                                                                                                gCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGctcctc  >  5:316786/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GACGCTCCCGGAATTTTTGTTTTCGACACACGAGGCAGGTAGCAACTGCATCGGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTC  >  NC_002947/683274‑683565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.