New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	683421 =	44 (0.850)	4 (0.080)	3/250	NT	9.6%	intergenic (‑149/+19)	PP_0584/PP_0585	methyl‑accepting chemotaxis transducer/MerR family metal‑sensitive transcriptional regulator
	?	NC_002947	683473 =	33 (0.660)					coding (378/411 nt)	PP_0585	MerR family metal‑sensitive transcriptional regulator

GGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAGCGCCTTCACA  >  NC_002947/683326‑683614                                                                                                                                                    |                                                                                                                                              tcgaggagctggtgagcctgcgcgacaccctcggcgagctggtttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCa                                                                                                                                              >  8:271130‑M1/96‑149 (MQ=255) ggCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGcc                                                                                                                                               <  1:58719/148‑1 (MQ=255)  gcagcaTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAg                                                                                                                                             <  3:231300/149‑1 (MQ=255)       aTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAGAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCtt                                                                                                                                        <  6:122787/149‑1 (MQ=255)       aTCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCtt                                                                                                                                        <  6:308994/149‑1 (MQ=255)        tCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                                                                       <  2:200987/149‑1 (MQ=255)        tCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGGGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGGGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                                                                       <  7:26918/149‑1 (MQ=255)        tCCGGCTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                                                                       <  4:20926/149‑1 (MQ=255)         ccGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCttt                                                                                                                                       >  8:61154/1‑148 (MQ=255)                ttATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGGTACCTGCAGCGGCATTGGCCAGGTCTGTGAGGAtgg                                                                                                                               >  6:292101/1‑147 (MQ=255)                    gAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTc                                                                                                                                          >  1:20176/1‑134 (MQ=255)                    gAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTc                                                                                                                                          <  2:20176/134‑1 (MQ=255)                        ccAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTcc                                                                                                                       >  8:77516/1‑149 (MQ=255)                                           tttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCa                                                                                                                                              >  6:44134‑M1/54‑107 (MQ=255)                                           tttcgcactgtcagggtgacgaccgcccggactgcccgatcctcaaagacctgGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCa                                                                                                                                              <  5:44134‑M1/54‑1 (MQ=255)                                             gATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGCGCAGTCCGGGCGGTCGTCACCCTGACAg                                                                                                  <  1:185373/149‑1 (MQ=255)                                                    tCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGaaa                                                                                           >  4:309192/1‑149 (MQ=255)                                                             gtGACTATTCGGTAGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGc                                                                                  >  5:294119/1‑149 (MQ=255)                                                                  tATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAgg                                                                             >  2:292995/1‑149 (MQ=255)                                                                    ttCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAgg                                                                             <  1:292995/147‑1 (MQ=255)                                                                         tCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTcgc                                                                      >  8:296857/1‑149 (MQ=255)                                                                              tttGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAgg                                                                 >  4:90773/1‑149 (MQ=255)                                                                              tttGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAg                                                                  <  7:77516/148‑1 (MQ=255)                                                                                  gACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTc                                                              <  3:309192/148‑1 (MQ=255)                                                                                     aTTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCAGCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCa                                                          >  3:269256/1‑149 (MQ=255)                                                                                            gCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGctcctc                                                   >  5:316786/1‑149 (MQ=255)                                                                                              tggccaatggcgctgcaggtagctgctgtcactgagctgccacgcgcctttggcCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGaaa                                                                                           >  6:44134‑M2/55‑107 (MQ=255)                                                                                              tggccaatggcgctgcaggtagctgctgtcactgagctgccacgcgcctttggcCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGaaa                                                                                           <  5:44134‑M2/53‑1 (MQ=255)                                                                                              tggccaatggcgctgcaggtagctgctgtcactgagctgccacgcgcctttggcCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGa                                                 >  8:271130‑M2/55‑149 (MQ=255)                                                                                                   AAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAg                                                                  >  1:70394‑M1/1‑127 (MQ=255)                                                                                                   AAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAg                                                                  <  2:70394‑M1/127‑1 (MQ=255)                                                                                                   AAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGctcctc                                                   >  3:178324‑M1/1‑142 (MQ=255)                                                                                                   AAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGctcctc                                                   <  4:178324‑M1/142‑1 (MQ=255)                                                                                                   AAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATgcgc                                            <  5:198619‑M1/149‑1 (MQ=255)                                                                                                      ggCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCgg                                         <  6:294119/149‑1 (MQ=255)                                                                                                         gcgTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGgtt                                       >  6:88693/1‑148 (MQ=255)                                                                                                          ctgcaggtagctgctgtcactgagctgccacgcgcctttggcCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGgttca                                     <  7:271130‑M2/107‑1 (MQ=255)                                                                                                          cgTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGgttca                                     <  7:61154/149‑1 (MQ=255)                                                                                                                      gTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTcg                                                                       <  6:315590/103‑1 (MQ=255)                                                                                                                      gTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTcg                                                                       >  5:315590/1‑103 (MQ=255)                                                                                                                         aCAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATgtggt                      <  6:198619/149‑1 (MQ=255)                                                                                                                         aCAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATgtggt                      >  3:298033/1‑149 (MQ=255)                                                                                                                            gcagcTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGgttcag                                    >  2:58734/1‑132 (MQ=255)                                                                                                                            gcagcTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGgttcag                                    <  1:58734/132‑1 (MQ=255)                                                                                                                                   ccTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAg            >  6:305269/1‑149 (MQ=255)                                                                                                                                     tGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAgcg          >  1:38456/1‑149 (MQ=255)                                                                                                                                      gCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAgcgc         >  2:59640/1‑149 (MQ=255)                                                                                                                                           gcCAGTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGGCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAGCGCCTTca    <  4:269256/149‑1 (MQ=255)                                                                                                                                             cATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAGCGCCTTcaca  >  3:291090/1‑149 (MQ=255)                                                                                                                                                   cCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAGCGCCtt      <  7:31407‑M2/138‑1 (MQ=255)                                                                                                                                                   cCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAGCGCCtt      >  8:31407‑M2/2‑139 (MQ=255)                                                                                                                                                    |                                                                                                                                              GGCAGCATCCGGGTTTTATGAAGCCAAAACGCCCGTATTTATTGGATAAAGTCGTGGTTGGTGACTATTCGGTCGTGTTTGGACATTTATGGCATGCCAAAGGCGCGTGGCAGCTCAGTGACAGCAGCTACCTGCAGCGCCATTGGCCAGGTCTTTGAGGATCGGGCAGTCCGGGCGGTCGTCACCCTGACAGTGCGAAACCAGCTCGCCGAGGGTGTCGCGCAGGCTCACCAGCTCCTCGATGCGCCGGTTCAGTTCATCGATGTGGTGCATGGCCAGCGCCTTCACA  >  NC_002947/683326‑683614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.