New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 694954	41 (0.790)	3 (0.060)	3/246	NT	7.5%	coding (795/1347 nt)	PP_0596	omega‑amino acid‑‑pyruvate aminotransferase
	?	NC_002947	= 694981	35 (0.720)					coding (822/1347 nt)	PP_0596	omega‑amino acid‑‑pyruvate aminotransferase

TGCCTCCAACATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCC  >  NC_002947/694807‑695100                                                                                                                                                     |                                                                                                                                                   tGCCTCCAACATCGCAGCAGTCATCGTCGAGGCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTC                                                                                                                                                    >  1:29516‑M1/1‑149 (MQ=255)    cTCCAACATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGcc                                                                                                                                                >  4:80261/1‑149 (MQ=255)    cTCCAACATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGcc                                                                                                                                                >  7:34360/1‑149 (MQ=255)     tCCAACATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCg                                                                                                                                               >  6:179662/1‑149 (MQ=255)     tCCAACATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCg                                                                                                                                               >  6:1830/1‑149 (MQ=255)          cATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATgg                                                                                                                                          >  7:127585/1‑149 (MQ=255)              gcagcaGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGgcg                                                                                                                                       <  7:290195/148‑1 (MQ=255)               cagcagTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGgcgc                                                                                                                                      >  2:257221/1‑148 (MQ=255)                 gcagTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGAt                                                                                                                                   >  5:23983/1‑149 (MQ=255)                    gTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGAc                                                                                                                                <  5:1830/149‑1 (MQ=255)                     tCATCGTCGA‑GCCGCTGGCCGGGTCGGCCGGTGGGCTGCCGCCGCCAAAGGGGTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGAcc                                                                                                                               <  6:185315/149‑1 (MQ=255)                       aTCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGgc                                                                                                                                        <  4:7622/138‑1 (MQ=255)                       aTCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGgc                                                                                                                                        >  3:7622/1‑138 (MQ=255)                              a‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaa                                                                                                                      >  3:321068‑M2/1‑146 (MQ=255)                                       gCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCgg                                                                                                              <  8:258455/149‑1 (MQ=255)                                        ccGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGc                                                                                                             <  8:34360/149‑1 (MQ=255)                                         cGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCcgagccggtcatcgcgcccatgcggccgaagcctgtgatc                                                                                                            <  2:330484‑M1/149‑41 (MQ=255)                                         cGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCg                                                                                                            >  3:89478/1‑149 (MQ=255)                                          ggTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGt                                                                                                           <  2:101749/149‑1 (MQ=255)                                               ggCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAccc                                                                                                      <  1:257221/149‑1 (MQ=255)                                                       tgctgcCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTg                                                                                              <  4:89478/149‑1 (MQ=255)                                                              gaagccAAAGTGTTACATGAATCGAATGAGTGAAATCTGCAAACATAACAACATTCTGCTGATCTTCGACGAAGTGATCCCAGTCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAACCCGGACCTTATGTGc                                                                                        >  7:203143/4‑148 (MQ=255)                                                               ccgccAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAccc                                                                                                      <  4:92478/133‑1 (MQ=255)                                                               ccgccAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAccc                                                                                                      >  3:92478/1‑133 (MQ=255)                                                                cgccAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATc                                                                                     <  3:80261/149‑1 (MQ=255)                                                                    aaaGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGcc                                                                                  >  3:88997/1‑148 (MQ=255)                                                                             ccTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGa                                                                        >  8:182471/1‑149 (MQ=255)                                                                                 aaGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCg                                                                                                               <  4:246346/106‑1 (MQ=255)                                                                                 aaGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCg                                                                                                               >  3:246346/1‑106 (MQ=255)                                                                                    cgcCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACgg                                                                 <  6:23983/149‑1 (MQ=255)                                                                                       cTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGgcgc                                                              <  4:297465/149‑1 (MQ=255)                                                                                       cTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGgcgc                                                              >  5:325826/1‑149 (MQ=255)                                                                                           gTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCcgagccggtcatcgcgcccatgcggccgaagcctgtgatcacttcgtcgaagat                                                                                              <  4:200723‑M1/113‑55 (MQ=255)                                                                                           gTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCcgagccggtcatcgcgcccatgcggccgaagcctgtgatcacttcgtcgaagat                                                                                              >  3:200723‑M1/1‑59 (MQ=255)                                                                                                                 caTTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCca                                    <  5:179662/149‑1 (MQ=255)                                                                                                                       gctgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATggg                                                  >  5:98925/1‑129 (MQ=255)                                                                                                                       gctgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATggg                                                  <  6:98925/129‑1 (MQ=255)                                                                                                                         tgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                               >  5:99347/1‑146 (MQ=255)                                                                                                                         tgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                               >  8:174174/1‑146 (MQ=255)                                                                                                                          gATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                               <  5:256908/145‑1 (MQ=255)                                                                                                                          gATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                               >  6:256908/1‑145 (MQ=255)                                                                                                                           aTCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcac                                                              <  4:200723‑M2/113‑60 (MQ=255)                                                                                                                           aTCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcac                                                              >  3:200723‑M2/1‑54 (MQ=255)                                                                                                                           aTCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCgag                            <  2:29516/147‑1 (MQ=255)                                                                                                                             cTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATc                         >  7:179904/1‑148 (MQ=255)                                                                                                                                   cgaAGTGATCACCGGCTTCTGCCTCATGGGCGCGATGACCGGCTCGTAAGCCTTCTGCGTTACCCCGTACCTGATGTTCATCTCCAAGCAGGTGACCAACGGCGCCATCCTGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACAAGa                  <  8:203143/149‑1 (MQ=255)                                                                                                                                     aaGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGAcc                <  8:179904/149‑1 (MQ=255)                                                                                                                                         gATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcacgcaggcgcttcaggtaaccctttggcggcggcagcacaccggccgaaccg            <  2:330484‑M2/149‑110 (MQ=255)                                                                                                                                          atgacaGGCTTCGTCCGCATGGTCGCGATGACGGGCTCGGTAGGGTTCGGCGTTACCCCGGACCTGAGGTGCATCGCCAATCAGGTGACCACCGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCa            <  6:101120/145‑1 (MQ=255)                                                                                                                                          aTCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGa                  <  8:98815/142‑1 (MQ=255)                                                                                                                                          aTCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGa                  >  7:98815/1‑142 (MQ=255)                                                                                                                                          aTCACAGGCTTCCGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCAt           <  8:127585/149‑1 (MQ=255)                                                                                                                                               aGGCTTCGGCCGCATTGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTc             <  5:228782/142‑1 (MQ=255)                                                                                                                                                 gCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAg    >  5:29785/1‑149 (MQ=255)                                                                                                                                                   ttCcgagccggtcatcgcgcccatgcggccgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcacgcaggcgcttcaggtaaccctttggcggcggcagcacaccggccgaaccggccagcggct  >  3:321068‑M1/1‑3 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGCCTCCAACATCGCAGCAGTCATCGTCGA‑GCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCC  >  NC_002947/694807‑695100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.