New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 694954	41 (0.790)	3 (0.060)	3/246	NT	7.5%	coding (795/1347 nt)	PP_0596	omega‑amino acid‑‑pyruvate aminotransferase
	?	NC_002947	= 694981	35 (0.720)					coding (822/1347 nt)	PP_0596	omega‑amino acid‑‑pyruvate aminotransferase

AGCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCCGACCCCGGAATACGCCGTGGAATTC  >  NC_002947/694836‑695125                                                                                                                                                  |                                                                                                                                                 aGCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaa                                                                                                                                               >  3:321068‑M2/1‑146 (MQ=255)         gCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCgg                                                                                                                                       <  8:258455/149‑1 (MQ=255)          ccGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGc                                                                                                                                      <  8:34360/149‑1 (MQ=255)           cGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCg                                                                                                                                     >  3:89478/1‑149 (MQ=255)            ggTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGt                                                                                                                                    <  2:101749/149‑1 (MQ=255)                 ggCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAccc                                                                                                                               <  1:257221/149‑1 (MQ=255)                         tgctgcCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTg                                                                                                                       <  4:89478/149‑1 (MQ=255)                                gaagccAAAGTGTTACATGAATCGAATGAGTGAAATCTGCAAACATAACAACATTCTGCTGATCTTCGACGAAGTGATCCCAGTCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAACCCGGACCTTATGTGc                                                                                                                 >  7:203143/4‑148 (MQ=255)                                 ccgccAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAccc                                                                                                                               <  4:92478/133‑1 (MQ=255)                                 ccgccAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTAccc                                                                                                                               >  3:92478/1‑133 (MQ=255)                                  cgccAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATc                                                                                                              <  3:80261/149‑1 (MQ=255)                                      aaaGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGcc                                                                                                           >  3:88997/1‑148 (MQ=255)                                               ccTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGa                                                                                                 >  8:182471/1‑149 (MQ=255)                                                   aaGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCg                                                                                                                                        <  4:246346/106‑1 (MQ=255)                                                   aaGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCg                                                                                                                                        >  3:246346/1‑106 (MQ=255)                                                      cgcCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACgg                                                                                          <  6:23983/149‑1 (MQ=255)                                                         cTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGgcgc                                                                                       >  5:325826/1‑149 (MQ=255)                                                         cTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGgcgc                                                                                       <  4:297465/149‑1 (MQ=255)                                                                                   caTTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCca                                                             <  5:179662/149‑1 (MQ=255)                                                                                         gctgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATggg                                                                           <  6:98925/129‑1 (MQ=255)                                                                                         gctgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATggg                                                                           >  5:98925/1‑129 (MQ=255)                                                                                           tgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                                                        >  8:174174/1‑146 (MQ=255)                                                                                           tgATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                                                        >  5:99347/1‑146 (MQ=255)                                                                                            gATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                                                        >  6:256908/1‑145 (MQ=255)                                                                                            gATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCagcagc                                                        <  5:256908/145‑1 (MQ=255)                                                                                             aTCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcac                                                                                       <  4:200723‑M2/113‑60 (MQ=255)                                                                                             aTCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcac                                                                                       >  3:200723‑M2/1‑54 (MQ=255)                                                                                             aTCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCgag                                                     <  2:29516/147‑1 (MQ=255)                                                                                               cTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATc                                                  >  7:179904/1‑148 (MQ=255)                                                                                                     cgaAGTGATCACCGGCTTCTGCCTCATGGGCGCGATGACCGGCTCGTAAGCCTTCTGCGTTACCCCGTACCTGATGTTCATCTCCAAGCAGGTGACCAACGGCGCCATCCTGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACAAGa                                           <  8:203143/149‑1 (MQ=255)                                                                                                       aaGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGAcc                                         <  8:179904/149‑1 (MQ=255)                                                                                                           gATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGgaagcctgtgatcacttcgtcgaagatcagcagaatgttgtgctgggtgcagatttcacgcaggcgcttcaggtaaccctttggcggcggcagcacaccggccgaaccg                                     <  2:330484‑M2/149‑110 (MQ=255)                                                                                                            atgacaGGCTTCGTCCGCATGGTCGCGATGACGGGCTCGGTAGGGTTCGGCGTTACCCCGGACCTGAGGTGCATCGCCAATCAGGTGACCACCGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCa                                     <  6:101120/145‑1 (MQ=255)                                                                                                            aTCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGa                                           <  8:98815/142‑1 (MQ=255)                                                                                                            aTCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGa                                           >  7:98815/1‑142 (MQ=255)                                                                                                            aTCACAGGCTTCCGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCAt                                    <  8:127585/149‑1 (MQ=255)                                                                                                                 aGGCTTCGGCCGCATTGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTc                                      <  5:228782/142‑1 (MQ=255)                                                                                                                   gCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAg                             >  5:29785/1‑149 (MQ=255)                                                                                                                                gggCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCcagca                                                          >  5:225919/1‑107 (MQ=255)                                                                                                                                gggCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCcagca                                                          <  6:225919/107‑1 (MQ=255)                                                                                                                                  gcgcGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCCGACCCCGGAATAc              >  4:127357/1‑149 (MQ=255)                                                                                                                                       aTGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCCGACCCCGGAATACGCCGt         <  7:182471/149‑1 (MQ=255)                                                                                                                                             ggCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCCGACCCCGGAATACGCCGTGGAAt    >  8:80857/1‑148 (MQ=255)                                                                                                                                              gCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCCGACCCCGGAATACGCCGTGGAATTc  <  6:99347/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AGCCGCTGGCCGGTTCGGCCGGTGTGCTGCCGCCGCCAAAGGGTTACCTGAAGCGCCTGCGTGAAATCTGCACCCAGCACAACATTCTGCTGATCTTCGACGAAGTGATCACAGGCTTCGGCCGCATGGGCGCGATGACCGGCTCGGAAGCCTTCGGCGTTACCCCGGACCTGATGTGCATCGCCAAGCAGGTGACCAACGGCGCCATCCCGATGGGCGCAGTGATTGCCAGCAGCGAGATCTACCAGACCTTCATGAACCAGCCGACCCCGGAATACGCCGTGGAATTC  >  NC_002947/694836‑695125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.