New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1138531 =	39 (0.760)	3 (0.070)	3/232	NT	8.1%	intergenic (‑62/+103)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1138620 =	33 (0.720)					intergenic (‑151/+14)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase

CGGATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGT  >  NC_002947/1138384‑1138677                                                                                                                                                    |                                                                                                                                                   cccggacctggccaacggcatcgatgtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCt                                                                                                                                                   <  3:115216‑M1/2‑1 (MQ=255) cccggacctggccaacggcatcgaagtggccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCt                                                                                                                                                   <  8:287214‑M1/2‑1 (MQ=255) cccggacctggccaacggcatcgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCt                                                                                                                                                   <  8:45261‑M1/2‑1 (MQ=255)  ccggacctggccaacggcatcgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCtg                                                                                                                                                  <  3:70935‑M1/3‑1 (MQ=255)    ggacctggccaacggcatcgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCtgtg                                                                                                                                                <  5:40355‑M1/5‑1 (MQ=255)    ggacctggccaacggaatcgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgagttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCtgtg                                                                                                                                                >  5:220913‑M1/145‑149 (MQ=255)     tatTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTgg                                                                                                                                               <  7:198938/149‑1 (MQ=255)     tatTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTgg                                                                                                                                               <  8:126276/149‑1 (MQ=255)     tatTCGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGGTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTgg                                                                                                                                               <  2:262792/149‑1 (MQ=255)             caacggcatcgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCTGTGGGAGCGGGc                                                                                                                                       <  4:96184‑M1/14‑1 (MQ=255)               cTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGATTGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCAt                                                                                                                                     >  5:15807/1‑149 (MQ=255)                        aGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGaa                                                                                                                            <  6:21696/149‑1 (MQ=255)                        aGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGaa                                                                                                                            <  2:276860/149‑1 (MQ=255)                          cGGGCATGGGCTCGCCTCGACGAAGCAGGGCGGTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTACTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAaga                                                                                                                          <  2:77109/149‑1 (MQ=255)                            gTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAgg                                                                                                                        >  2:161600/1‑149 (MQ=255)                                    cTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGTGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCt                                                                                                                <  5:202544/149‑1 (MQ=255)                                            gacgaAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTACACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGAcatcat                                                                                                        <  3:211121/149‑1 (MQ=255)                                               gaAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGCCCTGACATCATCga                                                                                                     >  4:41663/1‑149 (MQ=255)                                                      ggCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCg                                                                                              <  6:15807/149‑1 (MQ=255)                                                           atcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGa                                                                                         <  1:91942‑M1/60‑1 (MQ=255)                                                                 ccAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCtt                                                                                   >  5:60242/1‑149 (MQ=255)                                                                    gagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTcgc                                                                                >  3:235021‑M1/81‑149 (MQ=255)                                                                    aTGCAACAACGTTACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTcgc                                                                                <  3:153387/149‑1 (MQ=255)                                                                     tacaacaaCGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTcgcg                                                                               >  8:67560/3‑149 (MQ=255)                                                                       caggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctggctgatctataagtagcccgcagtccCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCggg                                                                             >  2:91942‑M1/78‑149 (MQ=255)                                                                        aacaacGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGc                                                                            <  1:161600/149‑1 (MQ=255)                                                                          caacGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCAc                                                                          >  7:214261/1‑149 (MQ=255)                                                                             cGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGcc                                                                       >  8:67330/1‑149 (MQ=255)                                                                                   gCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTcc                                                                 >  4:32388/1‑149 (MQ=255)                                                                                   gCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTcc                                                                 >  1:145815/1‑149 (MQ=255)                                                                                     aTGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCca                                                               >  7:117456/1‑149 (MQ=255)                                                                                         ggAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCACACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCcacacg                                                           >  1:313934/1‑147 (MQ=255)                                                                                          gAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAgg                                                           >  3:155783/1‑148 (MQ=255)                                                                                            aTGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGCCCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGAc                                                        >  6:40355/1‑149 (MQ=255)                                                                                                 cTTTCGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCg                                                    <  3:319339/148‑1 (MQ=255)                                                                                                  tttAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCga                                                                                                     <  6:264552/98‑1 (MQ=255)                                                                                                  tttAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCga                                                                                                     >  5:264552/1‑98 (MQ=255)                                                                                                     aGCTAAAGAATTAATGGCCTGTCGCTGCACGGAAGCGGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCt                                                <  8:117456/148‑1 (MQ=255)                                                                                                     aGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCt                                                <  6:60242/148‑1 (MQ=255)                                                                                                      gCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTa                                               <  8:214261/148‑1 (MQ=255)                                                                                                           aGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTtata                                         <  7:67330/149‑1 (MQ=255)                                                                                                              atgaatgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGa                                       <  3:32388/148‑1 (MQ=255)                                                                                                                            gCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGa                         <  7:67560/148‑1 (MQ=255)                                                                                                                                 aCGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAg                   >  6:187984/1‑149 (MQ=255)                                                                                                                                     aaGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGa                 <  3:153840/147‑1 (MQ=255)                                                                                                                                     aaGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTAGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGa                 >  4:153840/1‑147 (MQ=255)                                                                                                                                         tGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCt           >  7:241054/1‑149 (MQ=255)                                                                                                                                            ggAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGa        <  5:187984/149‑1 (MQ=255)                                                                                                                                             gAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGAt       <  4:155783/149‑1 (MQ=255)                                                                                                                                                   gCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCgtgt  <  4:320659/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CGGATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGT  >  NC_002947/1138384‑1138677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.