New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1407830 = | 47 (0.910) | 4 (0.080) | 4/248 | NT | 9.9% | coding (283/1509 nt) | PP_1230 | hypothetical protein |
? | NC_002947 | 1407882 = | 28 (0.570) | coding (335/1509 nt) | PP_1230 | hypothetical protein |
AAAAAGGCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAT > NC_002947/1407683‑1407978 | aaaaaGGCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAAATTTGACGTGGGCGt > 1:36209/1‑149 (MQ=255) gaacctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGt > 8:205321‑M1/148‑149 (MQ=255) aacctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattacctgcatcagcttcag > 8:141250‑M1/147‑147 (MQ=255) aacctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcag > 4:289134‑M1/147‑147 (MQ=255) cctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTgac > 7:132260‑M1/145‑149 (MQ=255) gCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccga < 3:191125/149‑1 (MQ=255) ccTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac > 7:237075/1‑148 (MQ=255) gTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac > 4:272725/1‑144 (MQ=255) aGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGa < 7:222964/149‑1 (MQ=255) gTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAg > 4:299347/1‑149 (MQ=255) tACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGTGCGTGACCGACCAGATCGAGc < 6:293760/149‑1 (MQ=255) tACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAg < 6:287875/148‑1 (MQ=255) tACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAg > 5:287875/1‑148 (MQ=255) ccGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCAc > 1:44396/1‑149 (MQ=255) ccGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGAAc > 5:175074/1‑149 (MQ=255) ggtggtAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACgg < 7:235173/149‑1 (MQ=255) tggtAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGcc < 3:299347/149‑1 (MQ=255) gtAGCATGAGGATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGccc < 7:138111/148‑1 (MQ=255) aTGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTcc > 1:177888/1‑149 (MQ=255) gAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac > 7:13464/1‑124 (MQ=255) gAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac < 8:13464/124‑1 (MQ=255) gCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTgg < 6:241447/149‑1 (MQ=255) cATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGt < 2:177888/149‑1 (MQ=255) tctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAg < 5:39819‑M1/41‑1 (MQ=255) aGCTTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTTATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAgg < 8:237075/149‑1 (MQ=255) aGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGTGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAgg < 5:167256/149‑1 (MQ=255) tgtCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCATATCGAGCACGGCCCGTTTCCGTGGTCGAGggtcag < 6:175074/148‑1 (MQ=255) tgtCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGggtcag < 2:44396/148‑1 (MQ=255) gCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGt > 3:259846/1‑131 (MQ=255) gCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGt < 4:259846/131‑1 (MQ=255) gCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCAc < 3:90962/149‑1 (MQ=255) gccttttcacccgcagcggcgaaccatggcgcaacggcgtcatgcttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCAc > 7:123444‑M1/92‑143 (MQ=255) gccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCAc < 8:123444‑M1/52‑1 (MQ=255) gcaTCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGt > 5:38586/1‑125 (MQ=255) gcaTCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGt < 6:38586/125‑1 (MQ=255) tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAGATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGcc > 1:69006/1‑149 (MQ=255) tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTgg > 7:54975/1‑119 (MQ=255) tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTgg < 8:54975/119‑1 (MQ=255) cacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGc > 6:39819‑M1/85‑148 (MQ=255) ctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTGTCCGTGGTCGa > 6:96147/1‑122 (MQ=255) ttCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCg < 3:272725/147‑1 (MQ=255) cagcaCTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGCCGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATgg > 3:226692/1‑149 (MQ=255) agcaCTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGc > 7:67077/1‑149 (MQ=255) gCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGttt < 6:256653/88‑1 (MQ=255) aaGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCt < 5:228788/113‑1 (MQ=255) aaGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCt > 6:228788/1‑113 (MQ=255) aaGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTg > 3:187183/1‑147 (MQ=255) cTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAg > 4:47439/1‑149 (MQ=255) gcgACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGAt < 2:6294/149‑1 (MQ=255) aTCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCa > 1:2586/1‑121 (MQ=255) aTCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCa < 2:2586/121‑1 (MQ=255) tgtgGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTg > 1:302885/1‑149 (MQ=255) ggCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGtt > 4:201123/1‑149 (MQ=255) aatttttGACGTGGGGGTGCCCGACAAGATCGAGCACGGCCGGTTTCGGTGTTCGTGGGTCAGGTCAGTGAAGCTTTTGCCGGAAATGGGGGTCAGAAAGGGAACGCTTCATATGTATGAGGCCTTTGCGCCATGGTTCGCCGCTGCg < 2:36209/145‑1 (MQ=255) aTTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGt > 1:19051/1‑149 (MQ=255) ttttGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGt > 8:42155/1‑148 (MQ=255) gggCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGccc < 2:302885/149‑1 (MQ=255) gCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGcccc > 8:163554/1‑148 (MQ=255) GTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAt < 6:240515‑M1/149‑1 (MQ=255) | AAAAAGGCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAT > NC_002947/1407683‑1407978 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |