New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1407830 =47 (0.910)4 (0.080) 4/248 NT 9.9% coding (283/1509 nt) PP_1230 hypothetical protein
?NC_002947 1407882 = 28 (0.570)coding (335/1509 nt) PP_1230 hypothetical protein

AAAAAGGCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAT  >  NC_002947/1407683‑1407978
                                                                                                                                                    |                                                                                                                                                    
aaaaaGGCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAAATTTGACGTGGGCGt                                                                                                                                                     >  1:36209/1‑149 (MQ=255)
 gaacctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGt                                                                                                                                                     >  8:205321‑M1/148‑149 (MQ=255)
  aacctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattacctgcatcagcttcag                                                                                                                                                      >  8:141250‑M1/147‑147 (MQ=255)
  aacctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcag                                                                                                                                                      >  4:289134‑M1/147‑147 (MQ=255)
    cctggctgaccacattgccgccgtaacccaggctggtctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTgac                                                                                                                                                  >  7:132260‑M1/145‑149 (MQ=255)
      gCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccga                                                                                                                                               <  3:191125/149‑1 (MQ=255)
        ccTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac                                                                                                                                              >  7:237075/1‑148 (MQ=255)
            gTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac                                                                                                                                              >  4:272725/1‑144 (MQ=255)
               aGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGa                                                                                                                                      <  7:222964/149‑1 (MQ=255)
                gTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAg                                                                                                                                     >  4:299347/1‑149 (MQ=255)
                 tACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGTGCGTGACCGACCAGATCGAGc                                                                                                                                    <  6:293760/149‑1 (MQ=255)
                 tACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAg                                                                                                                                     <  6:287875/148‑1 (MQ=255)
                 tACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAg                                                                                                                                     >  5:287875/1‑148 (MQ=255)
                   ccGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCAc                                                                                                                                  >  1:44396/1‑149 (MQ=255)
                   ccGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGAAc                                                                                                                                  >  5:175074/1‑149 (MQ=255)
                     ggtggtAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACgg                                                                                                                                <  7:235173/149‑1 (MQ=255)
                       tggtAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGcc                                                                                                                              <  3:299347/149‑1 (MQ=255)
                         gtAGCATGAGGATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGccc                                                                                                                             <  7:138111/148‑1 (MQ=255)
                              aTGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTcc                                                                                                                       >  1:177888/1‑149 (MQ=255)
                                gAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac                                                                                                                                              >  7:13464/1‑124 (MQ=255)
                                gAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTgaccgac                                                                                                                                              <  8:13464/124‑1 (MQ=255)
                                  gCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTgg                                                                                                                   <  6:241447/149‑1 (MQ=255)
                                   cATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGt                                                                                                                  <  2:177888/149‑1 (MQ=255)
                                        tctgcgcgctgatcggggccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAg                                                                                                              <  5:39819‑M1/41‑1 (MQ=255)
                                        aGCTTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTTATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAgg                                                                                                             <  8:237075/149‑1 (MQ=255)
                                        aGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGTGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAgg                                                                                                             <  5:167256/149‑1 (MQ=255)
                                              tgtCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCATATCGAGCACGGCCCGTTTCCGTGGTCGAGggtcag                                                                                                        <  6:175074/148‑1 (MQ=255)
                                              tgtCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTAGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGggtcag                                                                                                        <  2:44396/148‑1 (MQ=255)
                                                  gCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGt                                                                                                                     >  3:259846/1‑131 (MQ=255)
                                                  gCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGt                                                                                                                     <  4:259846/131‑1 (MQ=255)
                                                  gCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCAc                                                                                                   <  3:90962/149‑1 (MQ=255)
                                                         gccttttcacccgcagcggcgaaccatggcgcaacggcgtcatgcttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCAc                                                                                                   >  7:123444‑M1/92‑143 (MQ=255)
                                                         gccttttcacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCAc                                                                                                   <  8:123444‑M1/52‑1 (MQ=255)
                                                           gcaTCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGt                                                                                                                  >  5:38586/1‑125 (MQ=255)
                                                           gcaTCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGt                                                                                                                  <  6:38586/125‑1 (MQ=255)
                                                                tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAGATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGcc                                                                                      >  1:69006/1‑149 (MQ=255)
                                                                tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTgg                                                                                                                   >  7:54975/1‑119 (MQ=255)
                                                                tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTgg                                                                                                                   <  8:54975/119‑1 (MQ=255)
                                                                cacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGc                                                                                       >  6:39819‑M1/85‑148 (MQ=255)
                                                                 ctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTGTCCGTGGTCGa                                                                                                               >  6:96147/1‑122 (MQ=255)
                                                                  ttCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCg                                                                                     <  3:272725/147‑1 (MQ=255)
                                                                       cagcaCTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGCCGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATgg                                                                              >  3:226692/1‑149 (MQ=255)
                                                                        agcaCTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGc                                                                             >  7:67077/1‑149 (MQ=255)
                                                                                         gCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGttt                                                                                                                         <  6:256653/88‑1 (MQ=255)
                                                                                             aaGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCt                                                                                            <  5:228788/113‑1 (MQ=255)
                                                                                             aaGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCt                                                                                            >  6:228788/1‑113 (MQ=255)
                                                                                             aaGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTg                                                          >  3:187183/1‑147 (MQ=255)
                                                                                                 cTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAg                                                    >  4:47439/1‑149 (MQ=255)
                                                                                                    gcgACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGAt                                                 <  2:6294/149‑1 (MQ=255)
                                                                                                         aTCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCa                                                                        >  1:2586/1‑121 (MQ=255)
                                                                                                         aTCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCa                                                                        <  2:2586/121‑1 (MQ=255)
                                                                                                               tgtgGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTg                                       >  1:302885/1‑149 (MQ=255)
                                                                                                                         ggCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGtt                             >  4:201123/1‑149 (MQ=255)
                                                                                                                                    aatttttGACGTGGGGGTGCCCGACAAGATCGAGCACGGCCGGTTTCGGTGTTCGTGGGTCAGGTCAGTGAAGCTTTTGCCGGAAATGGGGGTCAGAAAGGGAACGCTTCATATGTATGAGGCCTTTGCGCCATGGTTCGCCGCTGCg                   <  2:36209/145‑1 (MQ=255)
                                                                                                                                      aTTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGt                >  1:19051/1‑149 (MQ=255)
                                                                                                                                       ttttGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGt                >  8:42155/1‑148 (MQ=255)
                                                                                                                                                gggCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGccc      <  2:302885/149‑1 (MQ=255)
                                                                                                                                                  gCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGcccc     >  8:163554/1‑148 (MQ=255)
                                                                                                                                                    GTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAt  <  6:240515‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AAAAAGGCCCTGGTCAGTACCGGTGGTAGCATGAGCATCGAGCGTGTGTCGCTGGAGCAGCATCTCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAT  >  NC_002947/1407683‑1407978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.