New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1407830 =	47 (0.910)	4 (0.080)	4/248	NT	9.9%	coding (283/1509 nt)	PP_1230	hypothetical protein
	?	NC_002947	1407882 =	28 (0.570)					coding (335/1509 nt)	PP_1230	hypothetical protein

TCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTC  >  NC_002947/1407747‑1408028                                                                                                                                         |                                                                                                                                                   tctTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCAGATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGcc                                                                                                                                        >  1:69006/1‑149 (MQ=255) cacccgcagcggcgaaccatggcgcaacggcgtcatccttctgcagcgtgctgttgctgaccgccattaccggcatcagcttcaGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGc                                                                                                                                         >  6:39819‑M1/85‑148 (MQ=255)   ttCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCg                                                                                                                                       <  3:272725/147‑1 (MQ=255)        cagcaCTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGCCGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATgg                                                                                                                                >  3:226692/1‑149 (MQ=255)         agcaCTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGc                                                                                                                               >  7:67077/1‑149 (MQ=255)                              aaGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCt                                                                                                                                              >  6:228788/1‑113 (MQ=255)                              aaGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCt                                                                                                                                              <  5:228788/113‑1 (MQ=255)                              aaGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTg                                                                                                            >  3:187183/1‑147 (MQ=255)                                  cTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAg                                                                                                      >  4:47439/1‑149 (MQ=255)                                     gcgACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGAt                                                                                                   <  2:6294/149‑1 (MQ=255)                                          aTCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCa                                                                                                                          >  1:2586/1‑121 (MQ=255)                                          aTCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCa                                                                                                                          <  2:2586/121‑1 (MQ=255)                                                tgtgGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTg                                                                                         >  1:302885/1‑149 (MQ=255)                                                          ggCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGtt                                                                               >  4:201123/1‑149 (MQ=255)                                                                     aatttttGACGTGGGGGTGCCCGACAAGATCGAGCACGGCCGGTTTCGGTGTTCGTGGGTCAGGTCAGTGAAGCTTTTGCCGGAAATGGGGGTCAGAAAGGGAACGCTTCATATGTATGAGGCCTTTGCGCCATGGTTCGCCGCTGCg                                                                     <  2:36209/145‑1 (MQ=255)                                                                       aTTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGt                                                                  >  1:19051/1‑149 (MQ=255)                                                                        ttttGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGt                                                                  >  8:42155/1‑148 (MQ=255)                                                                         gcatcagcttcagtgacctgaccctcgaccacggaaacgggccgtgctcgatctggtcggtcacTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTg                                                                 >  6:39819‑M2/65‑148 (MQ=255)                                                                                 gggCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGccc                                                        <  2:302885/149‑1 (MQ=255)                                                                                   gCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGcccc                                                       >  8:163554/1‑148 (MQ=255)                                                                                     gtgacctgaccctcgaccacggaaacgggccgtgctcgatctggtcggtcacTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGc                                                          <  8:123444‑M2/91‑1 (MQ=255)                                                                                     gtgacctgaccctcgaccacggaaacgggccgtgctcgatctggtcggtcacTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGCATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGc                                                          >  7:123444‑M2/53‑143 (MQ=255)                                                                                     GTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGAt                                                    <  6:240515‑M1/149‑1 (MQ=255)                                                                                       GACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCa                                                  >  4:187183‑M1/1‑149 (MQ=255)                                                                                        ACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCa                                                  >  3:47439‑M1/1‑148 (MQ=255)                                                                                           gaccAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAgcgc                                              >  4:22771/1‑149 (MQ=255)                                                                                               aGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAg                                          <  8:67077/149‑1 (MQ=255)                                                                                                gATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATCGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGa                                         >  4:153591/1‑149 (MQ=255)                                                                                                ctcgaccacggaaacgggccgtgctcgatctggtcggtcacTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGa                                         <  5:39819‑M2/108‑1 (MQ=255)                                                                                                         cGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTgg                                <  7:42155/149‑1 (MQ=255)                                                                                                         cGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTgg                                <  2:69006/149‑1 (MQ=255)                                                                                                         cGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTgg                                <  3:201123/149‑1 (MQ=255)                                                                                                            cccGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTgg                                >  7:162221/1‑146 (MQ=255)                                                                                                            cccGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTgg                                <  8:162221/146‑1 (MQ=255)                                                                                                                   ccGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTAcggcg                       <  5:240515/148‑1 (MQ=255)                                                                                                                           gAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAAtgtg               <  3:22771/148‑1 (MQ=255)                                                                                                                              ggtcaggtcaCTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGt             >  8:18128/1‑147 (MQ=255)                                                                                                                                    gtcacTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGTCAGCCAgg     >  7:132260‑M2/6‑149 (MQ=255)                                                                                                                                       acTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTc  >  8:205321‑M2/3‑149 (MQ=255)                                                                                                                                        cTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGTCAGCCAGGtt   >  4:289134‑M2/2‑147 (MQ=255)                                                                                                                                        cTGAAGCTGATGCAGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGTCAGCCAGGtt   >  8:141250‑M2/2‑147 (MQ=255)                                                                                                                                         |                                                                                                                                                   TCTTCAGCAGCACTGCCCAGTACCGGCTCAAGGCTCGCGACATCA‑ATGTGGGGCAGGGCGAGGTGATCAATTTTGACGTGGGCGTGACCGACCAGATCGAGCACGGCCCGTTTCCGTGGTCGAGGGTCAGGTCACTGAAGCTGATGCCGGTAATGGCGGTCAGCAACAGCACGCTGCAGAAGGATGACGCCGTTGCGCCATGGTTCGCCGCTGCGGGTGAAAAGGCCCCGATCAGCGCGCAGACCAGCCTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTC  >  NC_002947/1407747‑1408028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.