New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1735443	44 (0.850)	3 (0.060)	3/250	NT	6.4%	coding (1081/1206 nt)	csdA	cysteine desulfurase
	?	NC_002947	= 1735471	45 (0.910)					coding (1053/1206 nt)	csdA	cysteine desulfurase

GGTGCGCCTGTTCCGGCAGGCTCATCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCC  >  NC_002947/1735297‑1735590                                                                                                                                                   |                                                                                                                                                    ggTGCGCCTGTTCCGGCAGGCTCATCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATg                                                                                                                                                    <  2:181823/148‑1 (MQ=255)      gcCTGTTCCGGCAGGCTCATCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATTGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAg                                                                                                                                              >  7:235919/1‑149 (MQ=255)                      tCATCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGgcacgca                                                                                                                              >  1:223263/1‑149 (MQ=255)                      tCATCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGgcacgca                                                                                                                              >  4:130827/1‑149 (MQ=255)                        aTCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGgcacgcac                                                                                                                             <  8:303283/148‑1 (MQ=255)                           gCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGc                                                                                                                          >  7:125440/1‑148 (MQ=255)                            cAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCACTGGCATGCCGCAGTCGTGACCCGCACGCACGGCa                                                                                                                         >  8:189335/1‑148 (MQ=255)                             aaCAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATTGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGGGACCGGCACGCACGGCAat                                                                                                                       >  8:235919‑M2/1‑147 (MQ=255)                                aGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAatgcc                                                                                                                    >  4:68724‑M2/1‑144 (MQ=255)                                 gCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGccc                                                                                                                   <  3:313406/149‑1 (MQ=255)                                  cTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCt                                                                                                                  <  1:3449/149‑1 (MQ=255)                                  cTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACCCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCCCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGTCGCACTGGTGACCGGCACGAACGGCAATGCCCt                                                                                                                  >  2:319769/1‑149 (MQ=255)                                   tCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTg                                                                                                                 >  5:256073/1‑149 (MQ=255)                                     cAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATtgccgtgcgtgccggtcaccactgcgccatgccactg                                                                                                                <  1:299788‑M1/148‑38 (MQ=255)                                     cAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATtgccgagcgtgccggtcaccactgcgccatgccact                                                                                                                 <  6:263664‑M1/147‑37 (MQ=255)                                     cAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCGGTGGTGACCGGCACGCACGGCAATGCCCTGtt                                                                                                               <  8:231326/149‑1 (MQ=255)                                      aGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATtgccgtgcgtgccggtcaccactgcgccatgccactgct                                                                                                              <  5:208054‑M1/149‑40 (MQ=255)                                      aGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGtt                                                                                                               >  7:12532/1‑148 (MQ=255)                                                 cAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCaaa                                                                                                    <  3:130827/148‑1 (MQ=255)                                                   gcgcGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGa                                                                                                 <  4:125058/149‑1 (MQ=255)                                                     gcgTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGc                                                                                               <  8:125440/149‑1 (MQ=255)                                                       gTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCaaa                                                                                                    >  6:40274/1‑142 (MQ=255)                                                       gTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCaaa                                                                                                    <  5:40274/142‑1 (MQ=255)                                                       gTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCaa                                                                                             >  5:298043/1‑149 (MQ=255)                                                          gaagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAatat                                                                                          >  7:111634/1‑149 (MQ=255)                                                           aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTtcagtca                                                                                                         >  5:127330/1‑133 (MQ=255)                                                           aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTtcagtca                                                                                                         <  6:127330/133‑1 (MQ=255)                                                           aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGa                                                                                                 >  5:237151/1‑141 (MQ=255)                                                           aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGa                                                                                                 <  6:237151/141‑1 (MQ=255)                                                               aaCGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGc                                                                                      <  3:271700/148‑1 (MQ=255)                                                                aCGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGt                                                                                    >  3:11651/1‑149 (MQ=255)                                                                     gCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTtgtg                                                                                >  2:228779/1‑148 (MQ=255)                                                                             tCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTc                                                                       <  8:111634/149‑1 (MQ=255)                                                                                    cGTTGTACATACCCAGCGATACCCGTATGGCGCCCTCCATCCCCAGCCGCTTCAGCAGTTGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGAc                                                                 <  7:189335/148‑1 (MQ=255)                                                                                         tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCaaa                                                                                                    >  5:324611/1‑108 (MQ=255)                                                                                         tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCaaa                                                                                                    <  6:324611/108‑1 (MQ=255)                                                                                         tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAAc                                                            <  2:223263/148‑1 (MQ=255)                                                                                         tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACt                                                           >  1:232586/1‑149 (MQ=255)                                                                                         tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACt                                                           >  7:180453/1‑149 (MQ=255)                                                                                            aaaCCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGc                                                        >  1:119373/1‑149 (MQ=255)                                                                                            aaaCCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGc                                                        <  8:12532/149‑1 (MQ=255)                                                                                               cccAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAg                                                     <  1:7294/149‑1 (MQ=255)                                                                                                 cAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAggg                                                   <  6:256073/149‑1 (MQ=255)                                                                                                            gTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGt                                        <  4:11651/149‑1 (MQ=255)                                                                                                               tCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTgc                                      <  1:195816/148‑1 (MQ=255)                                                                                                                 gcgcCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGcc                                   >  6:178465/1‑149 (MQ=255)                                                                                                                                agccccTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGcc                    <  6:238647/149‑1 (MQ=255)                                                                                                                                      ttCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGc                                                                                      >  6:315698/1‑77 (MQ=255)                                                                                                                                      ttCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGc                                                                                      <  5:315698/77‑1 (MQ=255)                                                                                                                                      ttCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTcgcg              >  4:225134/1‑149 (MQ=255)                                                                                                                                         agcagTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcct           <  5:208054‑M2/149‑111 (MQ=255)                                                                                                                                           cagTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcctg          <  1:299788‑M2/148‑112 (MQ=255)                                                                                                                                            agTGGCATGGCGCAGTGGTGACCGGCACGCTCGGCAatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcctg          <  6:263664‑M2/147‑112 (MQ=255)                                                                                                                                               ggCATtgccgtgcgtgccggtcaccactgcgccatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcctggagct     >  4:68724‑M1/1‑5 (MQ=255)                                                                                                                                                gCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAgg    >  6:174778/1‑149 (MQ=255)                                                                                                                                                gCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAg     <  5:178465/148‑1 (MQ=255)                                                                                                                                                 cATGGCGCAGTGGTGACCGGCACGCACGGCTATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAgg    <  1:319769/148‑1 (MQ=255)                                                                                                                                                  aTtgccgtgcgtgccggtccccactgcgccatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcaatgacgtgcagcgtttcttcgacgcgctggaccaaggcctggagctgtt  >  8:235919‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGTGCGCCTGTTCCGGCAGGCTCATCGCAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGTCAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCC  >  NC_002947/1735297‑1735590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.