New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1735443	44 (0.850)	3 (0.060)	3/250	NT	6.4%	coding (1081/1206 nt)	csdA	cysteine desulfurase
	?	NC_002947	= 1735471	45 (0.910)					coding (1053/1206 nt)	csdA	cysteine desulfurase

CAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACGCAGCAGGTGCTGGTGCAGGCT  >  NC_002947/1735324‑1735614                                                                                                                                                    |                                                                                                                                                 cAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCACTGGCATGCCGCAGTCGTGACCCGCACGCACGGCa                                                                                                                                                  >  8:189335/1‑148 (MQ=255)  aaCAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATTGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGGGACCGGCACGCACGGCAat                                                                                                                                                >  8:235919‑M2/1‑147 (MQ=255)     aGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAatgcc                                                                                                                                             >  4:68724‑M2/1‑144 (MQ=255)      gCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGccc                                                                                                                                            <  3:313406/149‑1 (MQ=255)       cTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCt                                                                                                                                           <  1:3449/149‑1 (MQ=255)       cTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACCCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCCCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGTCGCACTGGTGACCGGCACGAACGGCAATGCCCt                                                                                                                                           >  2:319769/1‑149 (MQ=255)        tCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTg                                                                                                                                          >  5:256073/1‑149 (MQ=255)          cAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCGGTGGTGACCGGCACGCACGGCAATGCCCTGtt                                                                                                                                        <  8:231326/149‑1 (MQ=255)           aGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGtt                                                                                                                                        >  7:12532/1‑148 (MQ=255)                      cAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCaaa                                                                                                                            <  3:130827/148‑1 (MQ=255)                        gcgcGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGa                                                                                                                         <  4:125058/149‑1 (MQ=255)                          gcgTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGc                                                                                                                       <  8:125440/149‑1 (MQ=255)                            gTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCaaa                                                                                                                            <  5:40274/142‑1 (MQ=255)                            gTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCaaa                                                                                                                            >  6:40274/1‑142 (MQ=255)                            gTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCaa                                                                                                                     >  5:298043/1‑149 (MQ=255)                               gaagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAatat                                                                                                                  >  7:111634/1‑149 (MQ=255)                                aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTtcagt‑ca                                                                                                                                 >  5:127330/1‑133 (MQ=255)                                aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTtcagt‑ca                                                                                                                                 <  6:127330/133‑1 (MQ=255)                                aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGa                                                                                                                         <  6:237151/141‑1 (MQ=255)                                aagaaACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGa                                                                                                                         >  5:237151/1‑141 (MQ=255)                                    aaCGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGc                                                                                                              <  3:271700/148‑1 (MQ=255)                                     aCGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGt                                                                                                            >  3:11651/1‑149 (MQ=255)                                          gCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTtgtg                                                                                                        >  2:228779/1‑148 (MQ=255)                                                  tCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTc                                                                                               <  8:111634/149‑1 (MQ=255)                                                         cGTTGTACATACCCAGCGATACCCGTATGGCGCCCTCCATCCCCAGCCGCTTCAGCAGTTGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGAc                                                                                         <  7:189335/148‑1 (MQ=255)                                                              tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCaaa                                                                                                                            <  6:324611/108‑1 (MQ=255)                                                              tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCaaa                                                                                                                            >  5:324611/1‑108 (MQ=255)                                                              tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAAc                                                                                    <  2:223263/148‑1 (MQ=255)                                                              tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACt                                                                                   >  7:180453/1‑149 (MQ=255)                                                              tACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACt                                                                                   >  1:232586/1‑149 (MQ=255)                                                                 aaaCCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGc                                                                                <  8:12532/149‑1 (MQ=255)                                                                 aaaCCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGc                                                                                >  1:119373/1‑149 (MQ=255)                                                                    cccAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAg                                                                             <  1:7294/149‑1 (MQ=255)                                                                      cAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAggg                                                                           <  6:256073/149‑1 (MQ=255)                                                                                 gTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGt                                                                <  4:11651/149‑1 (MQ=255)                                                                                    tCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTgc                                                              <  1:195816/148‑1 (MQ=255)                                                                                      gcgcCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGcc                                                           >  6:178465/1‑149 (MQ=255)                                                                                                     agccccTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGcc                                            <  6:238647/149‑1 (MQ=255)                                                                                                           ttCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGc                                                                                                              >  6:315698/1‑77 (MQ=255)                                                                                                           ttCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGc                                                                                                              <  5:315698/77‑1 (MQ=255)                                                                                                           ttCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTcgcg                                      >  4:225134/1‑149 (MQ=255)                                                                                                              agcagTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcct                                    <  5:208054‑M2/149‑111 (MQ=255)                                                                                                                cagTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcctg                                   <  1:299788‑M2/148‑112 (MQ=255)                                                                                                                 agTGGCATGGCGCAGTGGTGACCGGCACGCTCGGCAatgccactgctgaaggggctggggctggagggcgcgatacgggtatcgctgggtttgtacaacgacagcgatgacgtgcagcgtttcttcgacgcgctggaccaaggcctg                                   <  6:263664‑M2/147‑112 (MQ=255)                                                                                                                     gCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAgg                            >  6:174778/1‑149 (MQ=255)                                                                                                                     gCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAg                             <  5:178465/148‑1 (MQ=255)                                                                                                                      cATGGCGCAGTGGTGACCGGCACGCACGGCTATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAgg                            <  1:319769/148‑1 (MQ=255)                                                                                                                          gcgcAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACg                       >  4:61080/1‑149 (MQ=255)                                                                                                                          gcgcAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACg                       <  3:61080/149‑1 (MQ=255)                                                                                                                                   tgACCGGCACGCACGGCAATGCCCTGTTCAGTACAGCAAATGAGCAATATCGGCGTTGTGCACGCCGTCGATGACGAAACTGGCCAGGGCCGTCTGCGGt                                                                >  1:40662/1‑100 (MQ=255)                                                                                                                                   tgACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGt                                                                <  2:40662/99‑1 (MQ=255)                                                                                                                                      ccGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCAc                        <  4:252210/136‑1 (MQ=255)                                                                                                                                      ccGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCAc                        >  3:252210/1‑136 (MQ=255)                                                                                                                                       cGGCACGCACGGCAATGCCCTGTTCAGT‑CAGTAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACGCAGCAGGTGCTgg          >  2:315790/1‑149 (MQ=255)                                                                                                                                           acgcacgGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACGCAGCAGGTGCTGGTGCa      <  6:298043/149‑1 (MQ=255)                                                                                                                                              cacgGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACGCAGCAGGTGCTGGTGCAggc   <  1:228779/149‑1 (MQ=255)                                                                                                                                               acgGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACGCAGCAGGTGCTGGTGCAggct  <  3:225134/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CAACAGCTCCAGGCCTTGGTCCAGCGCGTCGAAGAAACGCTGCACGTCATCGCTGTCGTTGTACAAACCCAGCGATACCCGTATCGCGCCCTCCAGCCCCAGCCCCTTCAGCAGTGGCATGGCGCAGTGGTGACCGGCACGCACGGCAATGCCCTGTTCAGT‑CAGCAAATGAGCAATATCGGCGTTGTGCACGCCCTCGATGACGAAACTGGCCAGGGCCGTCTGCGGTGCGCCCAACACCCGCACGCCCTCGCGGTCGCCCAGGCCACGCAGCAGGTGCTGGTGCAGGCT  >  NC_002947/1735324‑1735614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.