New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1741391 =	35 (0.680)	4 (0.080)	4/246	NT	10.0%	coding (522/753 nt)	PP_1538	hypothetical protein
	?	NC_002947	1741436 =	39 (0.800)					coding (477/753 nt)	PP_1538	hypothetical protein

GCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCAGGGTCCGTCTGCTGCGT  >  NC_002947/1741243‑1741539                                                                                                                                                     |                                                                                                                                                      cgaaatgcggttcgggcgcggctattactcaggccacattgtctacgcagcagacggaccctgcgaatgggcaggtgacgaggatggcgttggcgatccacggtcagcatggaagcccagcatccacatgccccgcgtggccggccgaa                                                                                                                                                       >  5:89984‑M1/149‑149 (MQ=255)    aatgcggttcgggcgcggctattactcaggccacattgtctacgcagcagacggaccctgcgaatgggcaggtgacgaggatggcgttggcgatccacggtcagcatggaagcccagcatccacatgccccgcgtggccggccgaATcc                                                                                                                                                    <  5:75444‑M1/4‑1 (MQ=255)     gcgcCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATc                                                                                                                                                     <  3:192237/147‑1 (MQ=255)                  aaGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGac                                                                                                                                      <  2:310374/149‑1 (MQ=255)                        attactcaggccacattgtctacgcagcagacggaccctgcgaatgggcaggtgacgaggatggcgttggcgatccacggtcagcatggaagcccagcatccacatgccccgcgtggccggccgaATCCTGCAGGCGCTCGAcacgcac                                                                                                                                <  6:309036‑M1/24‑1 (MQ=255)                           gCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTc                                                                                                                             >  2:40313/1‑149 (MQ=255)                             ccAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAACTCCGTCTCGCACTCGCCATCCTGCAGGCGCTCGACACGCACGTCgg                                                                                                                           >  7:173626/1‑149 (MQ=255)                             ccAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCa                                                                                                                                                >  1:282661/1‑128 (MQ=255)                             ccAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCa                                                                                                                                                <  2:282661/128‑1 (MQ=255)                                  ttCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGAc                                                                                                                       <  7:272316/148‑1 (MQ=255)                                     ccGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTc                                                                                                                    <  6:96192/148‑1 (MQ=255)                                      cGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTc                                                                                                                    >  8:40741/1‑147 (MQ=255)                                            aGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGa                                                                                                            <  7:40741/149‑1 (MQ=255)                                              cgcagcagacggaccctgcgaatgggcaggtgacgaggatggcgttggcgatccacggtcagcatggaagcccagcatccacatgccccgcgtggccggccgaATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGa                                                                                                            >  5:309036‑M1/104‑147 (MQ=255)                                                    tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggccg                                                                                                    >  3:179422/1‑149 (MQ=255)                                                    tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggccg                                                                                                    >  1:52042/1‑149 (MQ=255)                                                        gAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggccgg                                                                                                   <  8:251595/146‑1 (MQ=255)                                                             ggtggtAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg                                                                                           <  2:52042/149‑1 (MQ=255)                                                             ggtggtAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg                                                                                           <  3:142151/149‑1 (MQ=255)                                                             ggtggtAGTAGGGTTCGCGATCGCCGTGGTGAATGCGGTTTATGCGCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg                                                                                           <  4:179422/149‑1 (MQ=255)                                                               gcgaatgggcaggtgacgaggatggcgttggcgatccacggtcagcatggaagcccagcatccacatgccccgcgtggccggccgaATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTc                                                                                                                    <  6:278382‑M1/36‑1 (MQ=255)                                                               gcgaatgggcaggtgacgaggatggcgttggcgatccacggtcagcatggaagcccagcatccacatgccccgcgtggccggccgaATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTc                                                                                                                    >  5:278382‑M1/87‑122 (MQ=255)                                                                    gtagtGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCAtg                                                                                     <  4:38413/148‑1 (MQ=255)                                                                        tgtTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGAt                                                                                >  5:232060/1‑149 (MQ=255)                                                                         gtTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATg                                                                               >  8:82963/1‑149 (MQ=255)                                                                          ttCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggc                                                                                                      >  2:307653/1‑125 (MQ=255)                                                                             gCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGGAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTgg                                                                           >  8:28637/1‑149 (MQ=255)                                                                             gCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTgg                                                                           <  6:232060/149‑1 (MQ=255)                                                                             gCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTg                                                                            <  8:48876/148‑1 (MQ=255)                                                                               cATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGc                                                                         >  5:144197/1‑149 (MQ=255)                                                                                aTCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCt                                                                        <  1:143535/149‑1 (MQ=255)                                                                                     cGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCAt                                                                   <  7:82963/149‑1 (MQ=255)                                                                                              tGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGt                                                          >  2:192105/1‑149 (MQ=255)                                                                                                          ccTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACg                                              >  3:101873/1‑149 (MQ=255)                                                                                                              ggggACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGcc                                            <  4:101873/147‑1 (MQ=255)                                                                                                                         ggCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCt                              >  7:184972/1‑149 (MQ=255)                                                                                                                            tttCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGcc                           >  2:173951/1‑149 (MQ=255)                                                                                                                                gAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCAt                        >  6:75444/1‑148 (MQ=255)                                                                                                                                gAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCACGTGGATACTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCAtt                       >  6:295264/1‑149 (MQ=255)                                                                                                                                    tCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGAGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCg                     >  5:192042/1‑147 (MQ=255)                                                                                                                                            gccctcgccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCAGGGTCCGt           >  7:29216/1‑149 (MQ=255)                                                                                                                                               ctcgccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCAGGGTCCGTctg        >  3:238796/1‑149 (MQ=255)                                                                                                                                                  gccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGc                                             <  8:173773/110‑1 (MQ=255)                                                                                                                                                  gccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCATCCCTCGTCACCTGCCCATTCGCAGGGTCCGTctgct      <  1:40313/149‑1 (MQ=255)                                                                                                                                                     ATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCAGGGTCCGTCTGCTGCGt  >  6:144197‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCAGGGTCCGTCTGCTGCGT  >  NC_002947/1741243‑1741539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.