New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1741391 =	35 (0.680)	4 (0.080)	4/246	NT	10.0%	coding (522/753 nt)	PP_1538	hypothetical protein
	?	NC_002947	1741436 =	39 (0.800)					coding (477/753 nt)	PP_1538	hypothetical protein

TCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAATAGCCGCGCCCGAACCGCATTTCG  >  NC_002947/1741294‑1741583                                                                                                                                               |                                                                                                                                                      tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggccg                                                                                                                                                 >  1:52042/1‑149 (MQ=255) tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggccg                                                                                                                                                 >  3:179422/1‑149 (MQ=255)     gAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggccgg                                                                                                                                                <  8:251595/146‑1 (MQ=255)          ggtggtAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg                                                                                                                                        <  3:142151/149‑1 (MQ=255)          ggtggtAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg                                                                                                                                        <  2:52042/149‑1 (MQ=255)          ggtggtAGTAGGGTTCGCGATCGCCGTGGTGAATGCGGTTTATGCGCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg                                                                                                                                        <  4:179422/149‑1 (MQ=255)                 gtagtGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCAtg                                                                                                                                  <  4:38413/148‑1 (MQ=255)                     tgtTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGAt                                                                                                                             >  5:232060/1‑149 (MQ=255)                      gtTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATg                                                                                                                            >  8:82963/1‑149 (MQ=255)                       ttCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTcggc                                                                                                                                                   >  2:307653/1‑125 (MQ=255)                          gCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGGAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTgg                                                                                                                        >  8:28637/1‑149 (MQ=255)                          gCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTgg                                                                                                                        <  6:232060/149‑1 (MQ=255)                          gCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTg                                                                                                                         <  8:48876/148‑1 (MQ=255)                            cATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGc                                                                                                                      >  5:144197/1‑149 (MQ=255)                             aTCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCt                                                                                                                     <  1:143535/149‑1 (MQ=255)                                  cGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCAt                                                                                                                <  7:82963/149‑1 (MQ=255)                                           tGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGt                                                                                                       >  2:192105/1‑149 (MQ=255)                                                       ccTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACg                                                                                           >  3:101873/1‑149 (MQ=255)                                                           ggggACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGcc                                                                                         <  4:101873/147‑1 (MQ=255)                                                                      ggCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCt                                                                           >  7:184972/1‑149 (MQ=255)                                                                         tttCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGcc                                                                        >  2:173951/1‑149 (MQ=255)                                                                             gAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCAt                                                                     >  6:75444/1‑148 (MQ=255)                                                                             gAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCACGTGGATACTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCAtt                                                                    >  6:295264/1‑149 (MQ=255)                                                                                 tCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGAGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCg                                                                  >  5:192042/1‑147 (MQ=255)                                                                                         gccctcgccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGt                                                       >  7:29216/1‑149 (MQ=255)                                                                                            ctcgccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTctg                                                    >  3:238796/1‑149 (MQ=255)                                                                                               gccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGc                                                                                          <  8:173773/110‑1 (MQ=255)                                                                                               gccATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCATCCCTCGTCACCTGCCCATTCGCA‑GGGTCCGTctgct                                                  <  1:40313/149‑1 (MQ=255)                                                                                                  ATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGt                                              >  6:144197‑M1/1‑149 (MQ=255)                                                                                                   tcctgctggaggtcaccgacgtgcgtgtcgagcgcctgcaggatTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCg                                               >  5:309036‑M2/45‑147 (MQ=255)                                                                                                   TCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTa                                             >  8:184972‑M1/1‑149 (MQ=255)                                                                                                     CTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGa                                           >  4:238796‑M1/1‑149 (MQ=255)                                                                                                          ggCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAAtg                                      <  1:173951/149‑1 (MQ=255)                                                                                                          ggCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAAtg                                      <  7:28637/149‑1 (MQ=255)                                                                                                           gaggtcaccgacgtgcgtgtcgagcgcctgcaggatTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGc                                                                 <  6:278382‑M2/86‑1 (MQ=255)                                                                                                           gaggtcaccgacgtgcgtgtcgagcgcctgcaggatTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGc                                                                 >  5:278382‑M2/37‑122 (MQ=255)                                                                                                                 gACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCACGGGTCCGTCTGCTGCGTAGACAATGTGGc                                  <  1:192105/147‑1 (MQ=255)                                                                                                                  acacGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGc                                  <  4:253851/145‑1 (MQ=255)                                                                                                                  acacGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGc                                  >  3:253851/1‑145 (MQ=255)                                                                                                                      gcacgTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGGCAT‑CCTCGTCCCCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGCCTATGTGGCGTGAGTaa                          >  4:137728/1‑149 (MQ=255)                                                                                                                       gtgcgtgtcgagcgcctgcaggatTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAAt                         <  6:309036‑M2/125‑1 (MQ=255)                                                                                                                       cacgTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAAt                         <  5:219019/149‑1 (MQ=255)                                                                                                                        acgTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTctgc                                                   <  6:43150/122‑1 (MQ=255)                                                                                                                        acgTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTctgc                                                   >  5:43150/1‑122 (MQ=255)                                                                                                                        acgTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGAGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAATa                        <  6:192042/149‑1 (MQ=255)                                                                                                                          gTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAg                                            <  6:197739/127‑1 (MQ=255)                                                                                                                          gTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAg                                            >  5:197739/1‑127 (MQ=255)                                                                                                                                           ggatTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAATAGCCGCGCCCGAACCGCAtt     <  5:75444‑M2/145‑1 (MQ=255)                                                                                                                                              tTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAATAGCCGCGCCCGAACCGCATTTCg  >  5:89984‑M2/2‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                      TCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGACCGTGGATCGCCAACGCCAT‑CCTCGTCACCTGCCCATTCGCA‑GGGTCCGTCTGCTGCGTAGACAATGTGGCCTGAGTAATAGCCGCGCCCGAACCGCATTTCG  >  NC_002947/1741294‑1741583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.