New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1790646	32 (0.620)	4 (0.080)	4/250	NT	11.3%	coding (576/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
	?	NC_002947	= 1790684	32 (0.640)					coding (614/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase

GCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGC  >  NC_002947/1790498‑1790792                                                                                                                                                     |                                                                                                                                                   gcgcACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCC                                                                                                                                                    >  3:34643‑M1/1‑149 (MQ=255)     aCTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCcggcg                                                                                                                                                <  6:319870/149‑1 (MQ=255)            aTGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGtt                                                                                                                                         <  3:245053/149‑1 (MQ=255)                   cGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGaa                                                                                                                                  <  8:168104/149‑1 (MQ=255)                        cGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGcc                                                                                                                             >  7:218544/1‑149 (MQ=255)                         ggCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCg                                                                                                                            <  8:218544/149‑1 (MQ=255)                           cAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCagcagcgcctcgaccggcgtttcgcg                                                                                                                          >  5:1401‑M1/1‑123 (MQ=255)                             aaaGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCg                                                                                                                        <  1:210607/149‑1 (MQ=255)                                      cGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCgctgc                                                                                                               <  7:224773/149‑1 (MQ=255)                                           tgctgcCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggac                                                                                                          <  6:146546‑M2/149‑5 (MQ=255)                                             ctgcCGTTCGACAGCGAACACAACGCTATCTTCCAGTGCATTCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                        <  8:224616/149‑1 (MQ=255)                                             ctgcCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                        <  3:178084/149‑1 (MQ=255)                                                 cGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCagcagcgcctcgaccggcgtttcgcggaacggcccgccggacgcggta                                                                                                    <  6:1401‑M1/149‑49 (MQ=255)                                                 cGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGATGTGCGCCGGATCCTGCTTACCGCGTCCagcagcgcctcgaccggcgtttcgcggaacggcccgccg                                                                                                             >  7:157925‑M1/1‑101 (MQ=255)                                                 cGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGATGTGCGCCGGATCCTGCTTACCGCGTCCagcagcgcctcgaccggcgtttcgcggaacggcccgccg                                                                                                             <  8:157925‑M1/140‑40 (MQ=255)                                                   aTCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                        <  2:142260/143‑1 (MQ=255)                                                   aTCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                        >  1:142260/1‑143 (MQ=255)                                                       aCAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGAGCTGCTGGACGTGACTCCGGAg                                                                                              <  7:205515/149‑1 (MQ=255)                                                                  aaCGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTgc                                                                                   >  2:312463/1‑149 (MQ=255)                                                                       tATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCAcc                                                                              >  5:70589/1‑149 (MQ=255)                                                                         tCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCgctg                                                                                                                >  8:158482/1‑113 (MQ=255)                                                                         tCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCgctg                                                                                                                <  7:158482/113‑1 (MQ=255)                                                                                 tGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGTCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTc                                                                    <  2:186512/149‑1 (MQ=255)                                                                                    aTGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCAt                                                                 >  1:90567/1‑149 (MQ=255)                                                                                     tGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATg                                                                <  6:92244/149‑1 (MQ=255)                                                                                                tACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGgcgc                                                          >  7:52697/1‑144 (MQ=255)                                                                                                      cGTGGCCTGAGTGCCGTCGGTGTGCGCAGGATCCTGCTTACCGCGTCCGGCGGGCAGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGAATCCGGAGCAAGCCTGTGAGCACCCCAACTGGTACATGGGGAGCAAGATCTACGt                                               >  2:83657/1‑149 (MQ=255)                                                                                                               aGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCgg                                       <  8:52697/148‑1 (MQ=255)                                                                                                               aGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGc                                      <  5:146546/149‑1 (MQ=255)                                                                                                                    cGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggac                                                                                                          <  4:22591‑M2/76‑5 (MQ=255)                                                                                                                    cGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggac                                                                                                          >  3:22591‑M2/1‑72 (MQ=255)                                                                                                                         gtgtGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCatgat                             >  8:326/1‑148 (MQ=255)                                                                                                                              cgcCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACaa                       <  1:312463/149‑1 (MQ=255)                                                                                                                               gcCGGATCCTGCTTACCGCGTCCGTCTGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTTGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATTATGAACaaa                      <  1:83657/149‑1 (MQ=255)                                                                                                                                ccGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAg                     >  3:128686/1‑149 (MQ=255)                                                                                                                                ccGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAg                     <  4:128686/149‑1 (MQ=255)                                                                                                                                        tGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAg             >  2:154421/1‑149 (MQ=255)                                                                                                                                          cTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGtt           >  4:217132/1‑149 (MQ=255)                                                                                                                                           ttACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGtt           >  7:98938/1‑148 (MQ=255)                                                                                                                                            tACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacaccgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcg         <  6:1401‑M2/149‑102 (MQ=255)                                                                                                                                              ccGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGAt        <  3:217132/148‑1 (MQ=255)                                                                                                                                               cgcgTCCGGCGGGCCGTTACGCGAAAAGCCGGTCGAGGCGCTGCTGGACGTGACGCCGGAGCAAGCCTCTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATc       >  7:288378/1‑148 (MQ=255)                                                                                                                                                 cgTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCg      >  6:31119/1‑147 (MQ=255)                                                                                                                                                 cgTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGaa    <  3:229631/149‑1 (MQ=255)                                                                                                                                                  gTCCagcagcgcctcgaccggcgtttcgcggaacggcccgccggacgcggtaagcaggatccggcgcacaccgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcggcagca   <  6:146546‑M1/149‑146 (MQ=255)                                                                                                                                                  gTCCagcagcgcctcgaccggcgtttcgcggaacggcccgccggacgcggtaagcaggatccggcgcacaccgacg                                                                            >  3:22591‑M1/1‑4 (MQ=255)                                                                                                                                                  gTCCagcagcgcctcgaccggcgtttcgcggaacggcccgccggacgcggtaagcaggatccggcgcacaccgacg                                                                            <  4:22591‑M1/76‑73 (MQ=255)                                                                                                                                                   tCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGc  <  6:70589/149‑1 (MQ=255)                                                                                                                                                     cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacatcgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcg         >  7:157925‑M2/1‑39 (MQ=255)                                                                                                                                                     cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacatcgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcg         <  8:157925‑M2/140‑102 (MQ=255)                                                                                                                                                     cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCa                                    <  2:237971/113‑1 (MQ=255)                                                                                                                                                     cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCa                                    >  1:237971/1‑113 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGC  >  NC_002947/1790498‑1790792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.