New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1790646	32 (0.620)	4 (0.080)	4/250	NT	11.3%	coding (576/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
	?	NC_002947	= 1790684	32 (0.640)					coding (614/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase

TGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGATGCCGTGCCGTCCAAGGTTGAG  >  NC_002947/1790540‑1790829                                                                                                                                                 |                                                                                                                                                  tgctgcCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggac                                                                                                                                               <  6:146546‑M2/149‑5 (MQ=255)   ctgcCGTTCGACAGCGAACACAACGCTATCTTCCAGTGCATTCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                                                             <  8:224616/149‑1 (MQ=255)   ctgcCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                                                             <  3:178084/149‑1 (MQ=255)         aTCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                                                             <  2:142260/143‑1 (MQ=255)         aTCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGt                                                                                                                                             >  1:142260/1‑143 (MQ=255)             aCAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGAGCTGCTGGACGTGACTCCGGAg                                                                                                                                   <  7:205515/149‑1 (MQ=255)                        aaCGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTgc                                                                                                                        >  2:312463/1‑149 (MQ=255)                             tATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCAcc                                                                                                                   >  5:70589/1‑149 (MQ=255)                                       tGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGTCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTc                                                                                                         <  2:186512/149‑1 (MQ=255)                                          aTGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCAt                                                                                                      >  1:90567/1‑149 (MQ=255)                                           tGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATg                                                                                                     <  6:92244/149‑1 (MQ=255)                                                      tACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGgcgc                                                                                               >  7:52697/1‑144 (MQ=255)                                                            cGTGGCCTGAGTGCCGTCGGTGTGCGCAGGATCCTGCTTACCGCGTCCGGCGGGCAGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGAATCCGGAGCAAGCCTGTGAGCACCCCAACTGGTACATGGGGAGCAAGATCTACGt                                                                                    >  2:83657/1‑149 (MQ=255)                                                                     aGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCgg                                                                            <  8:52697/148‑1 (MQ=255)                                                                     aGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGc                                                                           <  5:146546/149‑1 (MQ=255)                                                                          cGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggac                                                                                                                                               <  4:22591‑M2/76‑5 (MQ=255)                                                                          cGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggac                                                                                                                                               >  3:22591‑M2/1‑72 (MQ=255)                                                                               gtgtGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCatgat                                                                  >  8:326/1‑148 (MQ=255)                                                                                    cgcCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACaa                                                            <  1:312463/149‑1 (MQ=255)                                                                                     gcCGGATCCTGCTTACCGCGTCCGTCTGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTTGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATTATGAACaaa                                                           <  1:83657/149‑1 (MQ=255)                                                                                      ccGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAg                                                          <  4:128686/149‑1 (MQ=255)                                                                                      ccGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAg                                                          >  3:128686/1‑149 (MQ=255)                                                                                              tGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAg                                                  >  2:154421/1‑149 (MQ=255)                                                                                                cTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGtt                                                >  4:217132/1‑149 (MQ=255)                                                                                                 ttACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGtt                                                >  7:98938/1‑148 (MQ=255)                                                                                                  tACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacaccgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcg                                              <  6:1401‑M2/149‑102 (MQ=255)                                                                                                    ccGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGAt                                             <  3:217132/148‑1 (MQ=255)                                                                                                     cgcgTCCGGCGGGCCGTTACGCGAAAAGCCGGTCGAGGCGCTGCTGGACGTGACGCCGGAGCAAGCCTCTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATc                                            >  7:288378/1‑148 (MQ=255)                                                                                                       cgTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCg                                           >  6:31119/1‑147 (MQ=255)                                                                                                       cgTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGaa                                         <  3:229631/149‑1 (MQ=255)                                                                                                         tCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGc                                       <  6:70589/149‑1 (MQ=255)                                                                                                           cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacatcgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcg                                              <  8:157925‑M2/140‑102 (MQ=255)                                                                                                           cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacatcgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcg                                              >  7:157925‑M2/1‑39 (MQ=255)                                                                                                           cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCa                                                                         >  1:237971/1‑113 (MQ=255)                                                                                                           cggcggGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCa                                                                         <  2:237971/113‑1 (MQ=255)                                                                                                                    gTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGgttgt                            >  1:282180/1‑149 (MQ=255)                                                                                                                       ccGCGACAGGCGGGTGGTTGCGCTGCTGGACGTGACTCCGTAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTACGTGGATTCGGCCAGCATGATGAACAAAGGCCTCTAGTTGATCGAAGCCTGCTGGTTGTTc                          <  8:288378/148‑1 (MQ=255)                                                                                                                        cgcgAAACGCCGGTCGAGGCGCTGCTggacgcggtaagcaggatccggcgcacaccgacggcactcaggccacgggcgtagtcgcctggcatgcactggaagatagcgttgtgttcgctgtcgatcggcagcagcacggcacccttttg                        >  5:1401‑M2/1‑26 (MQ=255)                                                                                                                          cgAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGAtg                      >  2:12584/1‑149 (MQ=255)                                                                                                                                accGGTCGAGGCGCTGCTGGACGTGACTAAGGAGCAAGCCTGTGCGCACCCCAAATGGTCGATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAATGCCTCGAGTTGATAGAAGCCTGCTGGGTGTTCGAtgacgtgc                >  8:137392/2‑149 (MQ=255)                                                                                                                                 ccGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGAtgccgtgcc               <  7:326/149‑1 (MQ=255)                                                                                                                                    gTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGATGCCGTGCCGTc            >  5:2768/1‑149 (MQ=255)                                                                                                                                     tCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGATGCCGTGCCGTcc           <  8:98938/149‑1 (MQ=255)                                                                                                                                                ctgGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGATGCCGTGCCGTCCAAGGTTGAg  <  5:31119/147‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  TGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAGGCGACTACGCCCGTGGCCTGAGTGCCGTCGGTGTGCGCCGGATCCTGCTTACCGCGTCCGGCGGGCCGTTCCGCGAAACGCCGGTCGAGGCGCTGCTGGACGTGACTCCGGAGCAAGCCTGTGCGCACCCCAACTGGTCCATGGGGCGCAAGATCTCCGTGGATTCGGCCAGCATGATGAACAAAGGCCTCGAGTTGATCGAAGCCTGCTGGTTGTTCGATGCCGTGCCGTCCAAGGTTGAG  >  NC_002947/1790540‑1790829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.