New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2653222 =	29 (0.560)	3 (0.060)	3/244	NT	9.3%	coding (609/948 nt)	PP_2325	2‑dehydropantoate 2‑reductase
	?	NC_002947	2653271 =	31 (0.640)					coding (658/948 nt)	PP_2325	2‑dehydropantoate 2‑reductase

GTGGGCCGGCCTCCGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGCTATGCCGAGCACTTGT  >  NC_002947/2653080‑2653367                                                                                                                                               |                                                                                                                                                  gTGGGCCGGCCTCCGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCg                                                                                                                                             <  3:303364/149‑1 (MQ=255)        ggccTCCGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGtgctgc                                                                                                                                      >  4:250232/1‑149 (MQ=255)              cGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTggggg                                                                                                                                >  7:242017/1‑149 (MQ=255)              cGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTgggg                                                                                                                                 <  1:9635/148‑1 (MQ=255)              cGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTggg                                                                                                                                  <  5:297809/147‑1 (MQ=255)                 ttGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCTCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGc                                                                                                                               >  8:5039/1‑147 (MQ=255)                    cGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGc                                                                                                                           <  1:174550/148‑1 (MQ=255)                                   gaatgaaGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATgg                                                                                                           >  3:9205/1‑149 (MQ=255)                                         ctggaacaagtgctcggcatagcccgcgggcagtacatggccacaggctgccgccccctgcaccacctcggccatcaaggcctgtatcagctcgcgactattGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACa                                                                                                     >  7:128673‑M1/103‑149 (MQ=255)                                                  gttgttCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTc                                                                                            >  7:62307/1‑149 (MQ=255)                                                     gttCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACtt                                                                                                                       >  3:26116/1‑119 (MQ=255)                                                     gttCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACtt                                                                                                                       <  4:26116/119‑1 (MQ=255)                                                          aGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCt                                                                                     >  3:179160/1‑148 (MQ=255)                                                           ggCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGa                                                                                   <  3:250232/149‑1 (MQ=255)                                                                         aCTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATg                                                                     >  6:61638/1‑149 (MQ=255)                                                                               ggccacaggctgccgccccctgcaccacctcggccatcaaggcctgtatcagctcgcgactattGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTcgc                                                                                          >  3:252888‑M1/65‑122 (MQ=255)                                                                               ggccacaggctgccgccccctgcaccacctcggccatcaaggcctgtatcagctcgcgactattGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTcgc                                                                                          <  4:252888‑M1/58‑1 (MQ=255)                                                                                   cATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATATAGGCCTTGATGGCCGAggtgg                                                           >  6:167175/1‑149 (MQ=255)                                                                                         tgccgccccctgcaccacctcggccatcaaggcctgtatcagctcgcgactattGCTGt                                                                                                                                               >  7:214284‑M1/55‑59 (MQ=255)                                                                                         tgccgccccctgcaccacctcggccatcaaggcctgtatcagctcgcgactattGCTGt                                                                                                                                               <  8:214284‑M1/5‑1 (MQ=255)                                                                                         gAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAgg                                                     >  6:263087/1‑149 (MQ=255)                                                                                              tGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCAGTGATGGCCGACAGCAATAGTCGCGAGCGGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGggcg                                                >  2:133206/1‑149 (MQ=255)                                                                                                gCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATATAGGCCTTGATGGCCGAGGTGGTGCAGGGggcgg                                               <  5:167175/148‑1 (MQ=255)                                                                                                       cgcgcTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGTGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCtgt                                       <  4:179160/149‑1 (MQ=255)                                                                                                              gCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCa                                  <  7:245391/147‑1 (MQ=255)                                                                                                                aGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTa                              <  5:263087/149‑1 (MQ=255)                                                                                                                      tGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGccc                        >  6:313449/1‑149 (MQ=255)                                                                                                                      tGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGccc                        >  4:174781/1‑149 (MQ=255)                                                                                                                           tgGAACGTGCCTTACATCGGGCTGGCGGGGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACATCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCgg                    <  4:9205/148‑1 (MQ=255)                                                                                                                             gAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCa                                  <  4:18998/132‑1 (MQ=255)                                                                                                                             gAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCa                                  >  3:18998/1‑132 (MQ=255)                                                                                                                             gAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGc                  >  5:238913/1‑148 (MQ=255)                                                                                                                                    ccTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGCTATGCCgc          >  5:209154/1‑148 (MQ=255)                                                                                                                                     cTTACAACGGGCTGGCGGTGCTGCGGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGCTATGCCGAg         <  6:193738/149‑1 (MQ=255)                                                                                                                                          aaCGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGCTATGCCGAGCACtt    >  4:120698/1‑149 (MQ=255)                                                                                                                                            cGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGCTATGCCGAGCACTTGt  <  7:5039/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                  GTGGGCCGGCCTCCGATTGCGGTGTCGCGCTGGTGAATGAAGGCGCCGGGTTGTTCCAGGCTGCGGGGATCGACTCGCAGGCCATGCCGAACCTGGCCTTGGCGCGCTGGCAGAAGCTGGTGTGGAACGTGCCTTACAACGGGCTGTCGGTGCTGCTGGGGGCCAGCACTTCGCCACTGATGGCCGACAGCAATAGTCGCGAGCTGATACAGGCCTTGATGGCCGAGGTGGTGCAGGGGGCGGCAGCCTGTGGCCATGTACTGCCCGCGGGCTATGCCGAGCACTTGT  >  NC_002947/2653080‑2653367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.