New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3393834 =	37 (0.720)	3 (0.060)	3/252	NT	7.9%	coding (573/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393867 =	34 (0.680)					coding (540/900 nt)	PP_2997	protein CnmA

GGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGAT  >  NC_002947/3393690‑3393975                                                                                                                                                 |                                                                                                                                               ggTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCt                                                                                                                                            <  4:212303/149‑1 (MQ=255)           aTTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCAt                                                                                                                                  <  7:52543/149‑1 (MQ=255)            ttATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATg                                                                                                                                 <  6:150562/149‑1 (MQ=255)                cTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTcc                                                                                                                                          <  3:106544/136‑1 (MQ=255)                cTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTcc                                                                                                                                          >  4:106544/1‑136 (MQ=255)                 ttCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑c                                                                                                                           <  2:306255/149‑1 (MQ=255)                     ccAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑Cg                                                                                                                          <  2:155025/146‑1 (MQ=255)                     ccAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑Cg                                                                                                                          >  1:155025/1‑146 (MQ=255)                      cAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGcc                                                                                                                        >  4:239543/1‑147 (MQ=255)                        gCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAgg                                                                                                                    >  3:57466/1‑149 (MQ=255)                         cccGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCGCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGgc                                                                                                                   >  5:285008/1‑149 (MQ=255)                                aaCGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGTTCATGCCAT‑CGCCCAGGCGCGGAtg                                                                                                            >  3:224513/1‑149 (MQ=255)                                 aCGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgc                                                                                                           >  3:208016/1‑149 (MQ=255)                                   aatcgggcgaagcggacctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgctg                                                                                                         >  7:302522‑M1/111‑149 (MQ=255)                                       gCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCTT‑CGCCCAGGCGCGGATGCTGCggg                                                                                                     <  5:64016/149‑1 (MQ=255)                                       gCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCggg                                                                                                     <  4:116661/149‑1 (MQ=255)                                            tCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCt                                                                                                >  1:44713/1‑149 (MQ=255)                                              gAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTc                                                                                               <  4:208016/148‑1 (MQ=255)                                                gCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAgg                                                                                            <  4:57466/149‑1 (MQ=255)                                                gCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAgg                                                                                            <  6:234695/149‑1 (MQ=255)                                                    ctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCAT‑CGCCCAGgcgc                                                                                                                 >  7:93800‑M1/94‑124 (MQ=255)                                                    ctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCAT‑CGCCCAGgcgc                                                                                                                 <  8:93800‑M1/31‑1 (MQ=255)                                                         gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgctgc                                                                                                        >  2:253291/1‑128 (MQ=255)                                                         gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgctgc                                                                                                        <  1:253291/128‑1 (MQ=255)                                                         gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAg                                                                                   <  3:165328/149‑1 (MQ=255)                                                          ccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGt                                                                                  >  7:64916/1‑149 (MQ=255)                                                                 aTCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTc                                                                           >  5:115469/1‑149 (MQ=255)                                                                    ccGGGCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGaa                                                                        <  4:224513/149‑1 (MQ=255)                                                                    ccGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGaa                                                                        <  3:239543/149‑1 (MQ=255)                                                                     cGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAAc                                                                       <  8:64916/149‑1 (MQ=255)                                                                         ccGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGca                                                                                          >  5:95848/1‑126 (MQ=255)                                                                         ccGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGca                                                                                          <  6:95848/126‑1 (MQ=255)                                                                                 aTCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGa                                                           <  6:285008/149‑1 (MQ=255)                                                                                    ccGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATa                                                         <  6:168601/148‑1 (MQ=255)                                                                                            agcagcTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGt                                                              <  4:310625/135‑1 (MQ=255)                                                                                            agcagcTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGt                                                              >  3:310625/1‑135 (MQ=255)                                                                                                  ttCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATa                                                         >  7:250785/1‑134 (MQ=255)                                                                                                  ttCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATa                                                         <  8:250785/134‑1 (MQ=255)                                                                                                                gAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGc                            >  4:97199/1‑149 (MQ=255)                                                                                                                            cacaTGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGcc                    <  6:115469/145‑1 (MQ=255)                                                                                                                                           ccGATACCGCTCCAGGCTCATGCCATGCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGAt  >  1:171642/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                               GGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGAT  >  NC_002947/3393690‑3393975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.