New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3393834 =	37 (0.720)	3 (0.060)	3/252	NT	7.9%	coding (573/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393867 =	34 (0.680)					coding (540/900 nt)	PP_2997	protein CnmA

AACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGAT  >  NC_002947/3393721‑3394004                                                                                                                                                    |                                                                                                                                          aaCGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGTTCATGCCAT‑CGCCCAGGCGCGGAtg                                                                                                                                         >  3:224513/1‑149 (MQ=255)  aCGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgc                                                                                                                                        >  3:208016/1‑149 (MQ=255)    aatcgggcgaagcggacctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgctg                                                                                                                                      >  7:302522‑M1/111‑149 (MQ=255)        gCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCTT‑CGCCCAGGCGCGGATGCTGCggg                                                                                                                                  <  5:64016/149‑1 (MQ=255)        gCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCggg                                                                                                                                  <  4:116661/149‑1 (MQ=255)             tCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCt                                                                                                                             >  1:44713/1‑149 (MQ=255)               gAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTc                                                                                                                            <  4:208016/148‑1 (MQ=255)                 gCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAgg                                                                                                                         <  6:234695/149‑1 (MQ=255)                 gCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAgg                                                                                                                         <  4:57466/149‑1 (MQ=255)                          gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgctgc                                                                                                                                     >  2:253291/1‑128 (MQ=255)                          gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGAtgctgc                                                                                                                                     <  1:253291/128‑1 (MQ=255)                          gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAg                                                                                                                <  3:165328/149‑1 (MQ=255)                           ccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGt                                                                                                               >  7:64916/1‑149 (MQ=255)                                  aTCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTc                                                                                                        >  5:115469/1‑149 (MQ=255)                                     ccGGGCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGaa                                                                                                     <  4:224513/149‑1 (MQ=255)                                     ccGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGaa                                                                                                     <  3:239543/149‑1 (MQ=255)                                      cGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAAc                                                                                                    <  8:64916/149‑1 (MQ=255)                                          ccGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGca                                                                                                                       >  5:95848/1‑126 (MQ=255)                                          ccGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGca                                                                                                                       <  6:95848/126‑1 (MQ=255)                                                  aTCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGa                                                                                        <  6:285008/149‑1 (MQ=255)                                                     ccGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATa                                                                                      <  6:168601/148‑1 (MQ=255)                                                             agcagcTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGt                                                                                           <  4:310625/135‑1 (MQ=255)                                                             agcagcTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGt                                                                                           >  3:310625/1‑135 (MQ=255)                                                                   ttCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATa                                                                                      <  8:250785/134‑1 (MQ=255)                                                                   ttCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATa                                                                                      >  7:250785/1‑134 (MQ=255)                                                                                 gAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGc                                                         >  4:97199/1‑149 (MQ=255)                                                                                             cacaTGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGcc                                                 <  6:115469/145‑1 (MQ=255)                                                                                                            ccGATACCGCTCCAGGCTCATGCCATGCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGAt                               >  1:171642/1‑149 (MQ=255)                                                                                                             cagcatccgcgcctgggcgatggcatgagcctggagcggATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGAtt                              >  7:302522‑M2/40‑149 (MQ=255)                                                                                                                     gcgcctgggcgatggcatgagcctggagcggATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAg                                               >  7:93800‑M2/32‑124 (MQ=255)                                                                                                                     gcgcctgggcgatggcatgagcctggagcggATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAg                                               <  8:93800‑M2/93‑1 (MQ=255)                                                                                                                       ccAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCg                                                       >  2:128209/1‑113 (MQ=255)                                                                                                                       ccAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCg                                                       <  1:128209/113‑1 (MQ=255)                                                                                                                       ccAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGctc                   >  3:304382/1‑149 (MQ=255)                                                                                                                        cAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGctct                  >  1:168084/1‑149 (MQ=255)                                                                                                                        cAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCACGGCACGAAGCCGATGCCCAGGTCCGCTTCGCCCGATTCCAGCGCGctct                  >  8:30690/1‑149 (MQ=255)                                                                                                                           gCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATg                                                    >  4:53737/1‑112 (MQ=255)                                                                                                                           gCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATg                                                    <  3:53737/112‑1 (MQ=255)                                                                                                                                 gCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGc         >  2:180058/1‑149 (MQ=255)                                                                                                                                         cccAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACACCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGAt  >  8:205692/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                          AACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCAT‑CGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGAT  >  NC_002947/3393721‑3394004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.