New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3433578 =	42 (0.810)	4 (0.080)	4/248	NT	8.4%	coding (257/531 nt)	PP_3050	hypothetical protein
	?	NC_002947	3433622 =	47 (0.950)					coding (301/531 nt)	PP_3050	hypothetical protein

GAGGTCGTCCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTGCGGTCTGGGTGGTCGAGTGGA  >  NC_002947/3433430‑3433721                                                                                                                                                      |                                                                                                                                                gAGGTCGTCCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGCCGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGc                                                                                                                                                 >  4:10240/1‑149 (MQ=255)   ggTCGTCCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTg                                                                                                                                               >  3:149352/1‑149 (MQ=255)   ggTCGTCCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTg                                                                                                                                               >  2:62642/1‑149 (MQ=255)    gtcgtcCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTg                                                                                                                                               >  6:213977/1‑148 (MQ=255)       gtcCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCAtt                                                                                                                                           >  7:240596/1‑149 (MQ=255)           cacaGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCATGCACGTGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATATCTTCATTTGTc                                                                                                                                       <  2:168423/149‑1 (MQ=255)           cACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTc                                                                                                                                       >  2:104782/1‑149 (MQ=255)                caggcggtggtgCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTcgccgc                                                                                                                                  >  4:70830/7‑149 (MQ=255)                 cTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCTCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCt                                                                                                                                 <  5:42345/149‑1 (MQ=255)                    cAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAg                                                                                                                              >  2:273955/1‑149 (MQ=255)                             tCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCtgtg                                                                                                                     >  5:170892/1‑149 (MQ=255)                               gAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCtgtg                                                                                                                     <  5:213977/147‑1 (MQ=255)                               gAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACCGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGtgct                                                                                                                   >  2:209113/1‑149 (MQ=255)                                   tGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTc                                                                                                               >  2:174219/1‑149 (MQ=255)                                     gCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTcc                                                                                                              <  5:201925/148‑1 (MQ=255)                                        ggATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCAt                                                                                                          <  8:240596/149‑1 (MQ=255)                                                agtccactcgaccacccagaccgcaaagccgtccagctctggcctgctccaatcgcgctcggcgcgtacgaactcagcgaacctgaccggcaggccccacgaCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAg                                                                                                      >  3:86736‑M1/103‑146 (MQ=255)                                                   tGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTggg                                                                                               <  1:174219/149‑1 (MQ=255)                                                   tGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTggg                                                                                               <  6:160286/149‑1 (MQ=255)                                                    gCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTggg                                                                                               <  3:70830/148‑1 (MQ=255)                                                     actcgaccacccagaccgcaaagccgtccagctctggcctgctccaatcgcgctcggcgcgtacgaactcagcgaacctcaccggcaggccccacgaCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTgggg                                                                                              >  8:222166‑M1/98‑149 (MQ=255)                                                               cccAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGTAACCGGGGGAGGAAGATAAGTGATTGCACATAGATGCATTTGTCGCCGCTCAGTTGGCTGTGCTGATCCGCTTGCAGTCGTGGGGCCTGCCGGt                                                                                     >  1:86125/1‑148 (MQ=255)                                                               cccAGCCACGGCGCAGACGGCGTTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGa                                                                                   <  4:13894/149‑1 (MQ=255)                                                                ccAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAg                                                                                  >  6:255039/1‑149 (MQ=255)                                                                ccAGGCAC‑GGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAgg                                                                                 >  6:38855/1‑149 (MQ=255)                                                                 cAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACC‑GGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGt                                                                                >  4:63432/1‑149 (MQ=255)                                                                      aCGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGc                                                                            <  1:209113/149‑1 (MQ=255)                                                                       caaagccgtccagctctggcctgctccaatcgcgctcggcgcgtacgaactcagcgaacctcaccggcaggccccacgaCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTgg                                                                                                <  8:62945‑M1/50‑1 (MQ=255)                                                                       caaagccgtccagctctggcctgctccaatcgcgctcggcgcgtacgaactcagcgaacctcaccggcaggccccacgaCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTgg                                                                                                >  7:62945‑M1/80‑129 (MQ=255)                                                                         gggCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGa                                                                         <  1:62642/149‑1 (MQ=255)                                                                         gggCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGa                                                                         <  1:104782/149‑1 (MQ=255)                                                                         gggCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGa                                                                         <  5:38855/149‑1 (MQ=255)                                                                             aGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGGCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTc                                                                     <  3:10240/149‑1 (MQ=255)                                                                                       tggcctgctccaatcgcgctcggcgcgtacgaactcagcgaacctcaccggcaggccccacgaCt                                                                                                                                                <  4:48137‑M1/2‑1 (MQ=255)                                                                                       tggcctgctccaatcgcgctcggcgcgtacgaactcagcgaacctcaccggcaggccccacgaCt                                                                                                                                                >  3:48137‑M1/64‑65 (MQ=255)                                                                                         aTGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAg                                                         >  6:54743/1‑149 (MQ=255)                                                                                          tGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAgc                                                        <  1:273955/149‑1 (MQ=255)                                                                                             gcgTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGc                                                                            >  2:272371/1‑126 (MQ=255)                                                                                             gcgTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGc                                                                            <  1:272371/126‑1 (MQ=255)                                                                                                ttttGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGAtt                                                  <  2:207952/149‑1 (MQ=255)                                                                                                ttttGAAGCGCGCGTGCTGGT‑ACC‑GGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTg                                                 <  3:63432/149‑1 (MQ=255)                                                                                                    gAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAg                                              >  4:139085/1‑149 (MQ=255)                                                                                                     aaGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCAGATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAg                                              <  2:86125/148‑1 (MQ=255)                                                                                                         gcgcgTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGc                                         <  6:170892/149‑1 (MQ=255)                                                                                                                   gT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGa                               >  4:295480/1‑149 (MQ=255)                                                                                                                         gggggAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCt                          >  5:223777/1‑149 (MQ=255)                                                                                                                            ggaggaAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTg                       <  2:39253/149‑1 (MQ=255)                                                                                                                             gaggaAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTGc                      <  3:295480/149‑1 (MQ=255)                                                                                                                                         tGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCttt                        >  7:182779/1‑135 (MQ=255)                                                                                                                                         tGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCttt                        <  8:182779/135‑1 (MQ=255)                                                                                                                                           cTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTGCGGTCTGGGTGGTc         >  1:8105/1‑148 (MQ=255)                                                                                                                                            ttGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTGCGGTCTGGGTGGTc         >  2:46395/1‑147 (MQ=255)                                                                                                                                                 caTAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTGCGGTCTGGGTGGTCGAGTGGa  <  5:54743/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                GAGGTCGTCCCACCGCCTGCAGTGGTGCTCGAACTGGCAGGATTCGAAAGTGCCGAAGAAGACCCAGGCACGGGGCAGACGGCGGTCGATGCGCGTTTTGAAGCGCGCGTGCTGGT‑ACCGGGGGAGGAAGATAACTGCTTGCACATAGCTGCATTTGTCGCCGCTCAGTTGGCTGTGCTGCTCCGCATGCAGTCGTGGGGCCTGCCGGTGAGGTTCGCTGAGTTCGTACGCGCCGAGCGCGATTGGAGCAGGCCAGAGCTGGACGGCTTTGCGGTCTGGGTGGTCGAGTGGA  >  NC_002947/3433430‑3433721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.