New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3597423 =	44 (0.850)	4 (0.080)	4/252	NT	8.4%	coding (689/1011 nt)	PP_3174	oxidoreductase
	?	NC_002947	3597463 =	45 (0.900)					coding (649/1011 nt)	PP_3174	oxidoreductase

CCATTGGTTATTCAACACCCAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCGGCCTGGCGGTTGACGAT  >  NC_002947/3597287‑3597571                                                                                                                                          |                                                                                                                                                     ccATTGGTTATTCAACACCCAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGc                                                                                                                                          >  3:111258/1‑149 (MQ=255) ccATTGGTTATTCAACACACAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCAGACGTCTGAATCTGCC‑GGGCAATGGTAAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTAGGc                                                                                                                                          >  7:300567/1‑149 (MQ=255)            tCAACACCCAGCCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTcc                                                                                                                               <  6:238219/149‑1 (MQ=255)              aaCACCCAGGCATTGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGATTCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTACATGATGCGTTTGTCCTGGCGGCGTGCTCGGCTACCGGCTTCCg                                                                                                                              <  4:238380/148‑1 (MQ=255)              aaCACCCAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCgg                                                                                                                             >  5:81445/1‑149 (MQ=255)              aaCACCCAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCgg                                                                                                                             <  8:93114/149‑1 (MQ=255)                   ccAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACcg                                                                                                                        >  6:251890/1‑149 (MQ=255)                     aGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACcgcg                                                                                                                      <  2:15216/149‑1 (MQ=255)                       gCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGcc                                                                                                                    >  7:65688/1‑149 (MQ=255)                          aacatcgtcaaccgccaggccgagcccgaacagctcacggccgccgccgcccatggtctgggcgtcgtacccttcagcccgctggcccggggcgtgctcagtggcaagtatgCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCg                                                                                                                  <  5:220199‑M1/37‑1 (MQ=255)                           acatcgtcaaccgccaggccgagcccgaacagctcacggccgccgccgcccatggtctgggcgtcgtacccttcagcccgctggcccggggcgtgctcagtggcaagtatgCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCgg                                                                                                                 >  6:220199‑M1/112‑149 (MQ=255)                                    cGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACtt                                                                                                        <  4:74957/148‑1 (MQ=255)                                    accgccaggccgagcccgaacagctcacggccgccgccgcccatggtctgggcgtcgtacccttcagcccgctggcccggggcgtgctcagtggcaagtatgCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCg                                                                                                                  >  5:17724‑M1/103‑139 (MQ=255)                                    accgccaggccgagcccgaacagctcacggccgccgccgcccatggtctgggcgtcgtacccttcagcccgctggcccggggcgtgctcagtggcaagtatgCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCg                                                                                                                  <  6:17724‑M1/37‑1 (MQ=255)                                     gACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCCGGGGCAATGGTCAGCGACTCATGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTg                                                                                                       >  1:68904/1‑149 (MQ=255)                                     gACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTcc                                                                                                                               <  2:250732/124‑1 (MQ=255)                                     gACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTcc                                                                                                                               >  1:250732/1‑124 (MQ=255)                                        aaTGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCAc                                                                                                   <  7:102006/149‑1 (MQ=255)                                             ccACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTgcc                                                                                                                                                      >  4:215418/1‑93 (MQ=255)                                             ccACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTgcc                                                                                                                                                      <  3:215418/93‑1 (MQ=255)                                                               cATACGTCTGAATCTGCC‑GGGCAATTGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCgg                                                                             <  6:81445/148‑1 (MQ=255)                                                               cATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGc                                                                               <  5:170487/146‑1 (MQ=255)                                                               cATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGc                                                                               <  8:65688/146‑1 (MQ=255)                                                               cATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCggg                                                                            >  8:107230/1‑149 (MQ=255)                                                                      cTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAgg                                                                     >  5:289214/1‑149 (MQ=255)                                                                         aaTCTGCC‑TGGCAATGGGCAGCGACTCCTTGCGCAACTACACTTCCATGATTCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCTGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAgg                                                                     <  8:300567/146‑1 (MQ=255)                                                                         aaTCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAgg                                                                     <  7:107230/146‑1 (MQ=255)                                                                         aaTCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTa                                                                  <  5:116101/149‑1 (MQ=255)                                                                          aTCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTac                                                                 >  8:202579/1‑149 (MQ=255)                                                                               cc‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTacgac                                                              <  5:251890/147‑1 (MQ=255)                                                                               cc‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGc                                                            >  3:92457/1‑149 (MQ=255)                                                                                c‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGcc                                                           >  1:100378/1‑149 (MQ=255)                                                                                  gggCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGcc                                                           >  7:28599/1‑148 (MQ=255)                                                                                      aaTGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGAc                                                      >  1:199501/1‑149 (MQ=255)                                                                                           tCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCt                                                                          <  8:32158/124‑1 (MQ=255)                                                                                           tCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCt                                                                          >  7:32158/1‑124 (MQ=255)                                                                                           tCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATgg                                                 <  1:112043/149‑1 (MQ=255)                                                                                               cGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGggcgg                                             >  7:20343/1‑149 (MQ=255)                                                                                                   tCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGggcggcggc                                         >  3:83200/1‑149 (MQ=255)                                                                                                     cTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGggcggcggcgg                                       <  6:258448/149‑1 (MQ=255)                                                                                                     cTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGggcggcggcgg                                       >  5:258448/1‑149 (MQ=255)                                                                                                          gcCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGt                                   >  8:308673/1‑148 (MQ=255)                                                                                                           ccactccactTCCTTGATGCGTTTGTCGTGCGGCCCTGCTCGTCTACCGGATTCCGGCACCGCGCCCGGCGCATACTTGCCACTGCGCACGCCCCGGGCCAGGGGGCTGAAGGGTACGTCGCCCAGACCATGGGCGGGGGCGGCCGTGa                                 <  8:28599/149‑1 (MQ=255)                                                                                                            cactccactTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAg                                <  2:199501/149‑1 (MQ=255)                                                                                                            cactccactTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAg                                >  6:62513/1‑149 (MQ=255)                                                                                                             actccactTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGc                               >  1:273927/1‑149 (MQ=255)                                                                                                                      ccATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCgg                        <  7:308673/147‑1 (MQ=255)                                                                                                                      ccATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGc                      >  5:135733/1‑149 (MQ=255)                                                                                                                         tgatgCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCg                   <  6:135733/149‑1 (MQ=255)                                                                                                                              cGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCGGCCt               <  8:20343/148‑1 (MQ=255)                                                                                                                                     ccTGCCGCCCCGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGTTGAAGGGTACGACGcc                                                           <  4:164830/97‑1 (MQ=255)                                                                                                                                     ccTGCCGCCCCGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGTTGAAGGGTACGACGcc                                                           >  3:164830/1‑97 (MQ=255)                                                                                                                                      cTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCGGCCTGGCGGTTGa      <  5:62513/149‑1 (MQ=255)                                                                                                                                       tGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCGGCCTGGCGGTTGAc     >  6:43281/1‑149 (MQ=255)                                                                                                                                          CGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCGGCCTGGCGGTTGACGAt  >  7:202579‑M1/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                     CCATTGGTTATTCAACACCCAGGCAATGGCGAATTCGACAATGCCCACCCCCTTGGCCTCTGCATACGTCTGAATCTGCC‑GGGCAATGGTCAGCGACTCCTGGCGCCACTCCACTTCCATGATGCGTTTGTCCTGCCGCCCTGCTCGGCTACCGGCTTCCGGCACCGCGCCCGGCGCATACTTGCCACTGAGCACGCCCCGGGCCAGCGGGCTGAAGGGTACGACGCCCAGACCATGGGCGGCGGCGGCCGTGAGCTGTTCGGGCTCGGCCTGGCGGTTGACGAT  >  NC_002947/3597287‑3597571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.