New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4065096	36 (0.700)	3 (0.060)	3/248	NT	7.4%	coding (864/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	= 4065143	41 (0.830)					coding (817/1491 nt)	PP_3582	RND transporter outer membrane protein

GCTGAGGTCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGG  >  NC_002947/4064949‑4065243                                                                                                                                                    |                                                                                                                                                    gCTGAGGTCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCt                                                                                                                                                    >  1:295035/1‑149 (MQ=255)  cTGAGGTCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCtt                                                                                                                                                   <  2:295035/149‑1 (MQ=255)   tGAGGTCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTg                                                                                                                                                  >  3:5551/1‑149 (MQ=255)        tCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCt                                                                                                                                                    >  1:47635/1‑142 (MQ=255)        tCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCt                                                                                                                                                    <  2:47635/142‑1 (MQ=255)              aaaTAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTACGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAACCCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAg                                                                                                                                       >  6:291336/1‑149 (MQ=255)                    gCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGaa                                                                                                                                 <  2:165920/149‑1 (MQ=255)                       gCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTc                                                                                                                              >  1:20583/1‑149 (MQ=255)                         ccGCGACACCCCGATGTTGGCATTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCgg                                                                                                                            >  5:175556/1‑149 (MQ=255)                              acacCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGa                                                                                                                       <  4:5551/149‑1 (MQ=255)                                acCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGCCGAAGTCGGCCGGacc                                                                                                                     >  3:256019/1‑147 (MQ=255)                                     gATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGc                                                                                                                >  4:45644/1‑149 (MQ=255)                                         ttggcgttggcCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCgtgctgctgggcaaggctccggccgacttcgccctggccga                                                                                                            >  8:55255‑M1/1‑108 (MQ=255)                                           ggcgttggcCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCcagc                                                                                                           <  4:174085/148‑1 (MQ=255)                                               ttggcCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCAc                                                                                                      >  2:65030/1‑149 (MQ=255)                                                  gccgccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACgg                                                                                                    >  8:283542‑M2/1‑146 (MQ=255)                                                   ccgccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggc                                                                                                   <  8:106237‑M2/148‑4 (MQ=255)                                                    cgccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcga                                                                                                 <  6:112150‑M2/149‑6 (MQ=255)                                                     gccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCgtgctgctgggcaaggctccggccgacttcgccctggccgacagcaaggcgat                                                                                                <  7:55255‑M1/149‑54 (MQ=255)                                                     gccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgat                                                                                                >  2:20583‑M2/1‑143 (MQ=255)                                                      ccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATg                                                                                               <  7:106237/149‑1 (MQ=255)                                                       cATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCgtgctgctgggcaaggctccggccgacttcgccctggccgacagcaaggcgattc                                                                                              <  7:178437‑M1/149‑56 (MQ=255)                                                       cATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATgg                                                                                              >  1:283951/1‑149 (MQ=255)                                                        aTCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGc                                                                                             >  2:83086/1‑149 (MQ=255)                                                              ttGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAg                                                                                                                                       <  6:6156/101‑1 (MQ=255)                                                                  gTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCTGGAATCGCCTTGCTGTCGGCCATGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAAc                                                                                   <  5:291336/149‑1 (MQ=255)                                                                             gCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTg                                                                        >  6:13342/1‑149 (MQ=255)                                                                              cGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCcagc                                                                                                           >  5:156136/1‑113 (MQ=255)                                                                              cGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCcagc                                                                                                           <  6:156136/113‑1 (MQ=255)                                                                               gATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGcc                                                                      <  8:40769/149‑1 (MQ=255)                                                                                     cGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGatca                                                                <  3:45644/149‑1 (MQ=255)                                                                                             gcTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGatcaggtcaatc                                                        <  6:175556/149‑1 (MQ=255)                                                                                                ccAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGaa                                                                                    <  3:13702/118‑1 (MQ=255)                                                                                                ccAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGGTTTCGaa                                                                                    >  4:13702/1‑118 (MQ=255)                                                                                                    cagcTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAg                                                 >  2:267177/1‑149 (MQ=255)                                                                                                       cTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCt                                              >  5:329688/1‑149 (MQ=255)                                                                                                          cGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTggg                                           >  8:291224/1‑149 (MQ=255)                                                                                                          cGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTgg                                            <  5:112150/148‑1 (MQ=255)                                                                                                               gCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACtt                                      >  5:177894/1‑149 (MQ=255)                                                                                                                 aGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACtttt                                    >  2:315927/1‑149 (MQ=255)                                                                                                                  gCGAAACCGGTATTTGCCGCAACGGGGGTATCGCCTTGCTGTGGGGCATGGCGAAGTCGGCCTGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTg                                   <  4:256019/149‑1 (MQ=255)                                                                                                                    gAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAg                                 >  1:133545/1‑149 (MQ=255)                                                                                                                      aaCCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCt                               <  7:291224/149‑1 (MQ=255)                                                                                                                       aCCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCg                                                                                                                         <  6:184428/58‑1 (MQ=255)                                                                                                                       aCCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCg                                                                                                                         >  5:184428/1‑58 (MQ=255)                                                                                                                        ccGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGc                             <  6:329688/149‑1 (MQ=255)                                                                                                                                      aaCGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGc               >  2:48124/1‑149 (MQ=255)                                                                                                                                            ggAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGc         <  5:13342/149‑1 (MQ=255)                                                                                                                                             gAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatg        <  7:178437‑M2/149‑95 (MQ=255)                                                                                                                                               aTCGCCgtgctgctgggcaaggctccggccgacttcgccctggccgacagcaaggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggc      >  2:20583‑M1/1‑6 (MQ=255)                                                                                                                                               aTCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggc      <  7:55255‑M2/149‑97 (MQ=255)                                                                                                                                                tCGCCgtgctgctgggcaaggctccggccgacttcgccctggccgacagcaaggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggcg     <  6:112150‑M1/149‑145 (MQ=255)                                                                                                                                                tCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATcc     >  5:257273/1‑149 (MQ=255)                                                                                                                                                  gCCgtgctgctgggcaaggctccggccgacttcgccctggccgacagcaaggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggcgg    <  8:106237‑M1/148‑146 (MQ=255)                                                                                                                                                   ccgtgctgctgggcaaggctccggccgacttcgccctggccgacagcaaggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggcggc   >  8:283542‑M1/1‑2 (MQ=255)                                                                                                                                                   ccTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCggg  >  8:111408/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCTGAGGTCCGGGAAATAGGCTGCCCGCGACACCCCGATGTTGGCGTTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGG  >  NC_002947/4064949‑4065243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.