New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4065096	36 (0.700)	3 (0.060)	3/248	NT	7.4%	coding (864/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	= 4065143	41 (0.830)					coding (817/1491 nt)	PP_3582	RND transporter outer membrane protein

TTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGTTTTCGTTCATTCGCA  >  NC_002947/4064995‑4065283                                                                                                                                                     |                                                                                                                                             ttggcCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCAc                                                                                                                                              >  2:65030/1‑149 (MQ=255)    gccgccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACgg                                                                                                                                            >  8:283542‑M2/1‑146 (MQ=255)     ccgccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggc                                                                                                                                           <  8:106237‑M2/148‑4 (MQ=255)      cgccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcga                                                                                                                                         <  6:112150‑M2/149‑6 (MQ=255)       gccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgat                                                                                                                                        >  2:20583‑M2/1‑143 (MQ=255)        ccATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATg                                                                                                                                       <  7:106237/149‑1 (MQ=255)         cATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATgg                                                                                                                                      >  1:283951/1‑149 (MQ=255)          aTCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGc                                                                                                                                     >  2:83086/1‑149 (MQ=255)                    gTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCTGGAATCGCCTTGCTGTCGGCCATGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAAc                                                                                                                           <  5:291336/149‑1 (MQ=255)                               gCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTg                                                                                                                >  6:13342/1‑149 (MQ=255)                                 gATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGcc                                                                                                              <  8:40769/149‑1 (MQ=255)                                       cGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGatca                                                                                                        <  3:45644/149‑1 (MQ=255)                                               gcTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGatcaggtcaatc                                                                                                <  6:175556/149‑1 (MQ=255)                                                  ccAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGaa                                                                                                                            <  3:13702/118‑1 (MQ=255)                                                  ccAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGGTTTCGaa                                                                                                                            >  4:13702/1‑118 (MQ=255)                                                      cagcTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAg                                                                                         >  2:267177/1‑149 (MQ=255)                                                         cTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCt                                                                                      >  5:329688/1‑149 (MQ=255)                                                            cGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTggg                                                                                   >  8:291224/1‑149 (MQ=255)                                                            cGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTgg                                                                                    <  5:112150/148‑1 (MQ=255)                                                                 gCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACtt                                                                              >  5:177894/1‑149 (MQ=255)                                                                   aGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACtttt                                                                            >  2:315927/1‑149 (MQ=255)                                                                    gCGAAACCGGTATTTGCCGCAACGGGGGTATCGCCTTGCTGTGGGGCATGGCGAAGTCGGCCTGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTg                                                                           <  4:256019/149‑1 (MQ=255)                                                                      gAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAg                                                                         >  1:133545/1‑149 (MQ=255)                                                                        aaCCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCt                                                                       <  7:291224/149‑1 (MQ=255)                                                                          ccGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGc                                                                     <  6:329688/149‑1 (MQ=255)                                                                                        aaCGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGc                                                       >  2:48124/1‑149 (MQ=255)                                                                                              ggAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGc                                                 <  5:13342/149‑1 (MQ=255)                                                                                               gAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatg                                                <  7:178437‑M2/149‑95 (MQ=255)                                                                                                 aTCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggc                                              <  7:55255‑M2/149‑97 (MQ=255)                                                                                                  tCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATcc                                             >  5:257273/1‑149 (MQ=255)                                                                                                     ccTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCggg                                          >  8:111408/1‑149 (MQ=255)                                                                                                         gCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCt                                                                       >  7:281719/1‑116 (MQ=255)                                                                                                         gCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCt                                                                       <  8:281719/116‑1 (MQ=255)                                                                                                          cTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGc                                     <  3:250649/149‑1 (MQ=255)                                                                                                          cTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGc                                     <  1:65030/149‑1 (MQ=255)                                                                                                             tCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACggcgattcccgcgttgccgcaaataccggtttcgctgccttcgcagctgctggagcggcgcccggacatcgctgcagccgaacgcaacgtgatggcggccaacgccaa                                  >  8:55255‑M2/1‑41 (MQ=255)                                                                                                             tCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGa                                   >  1:151981/1‑148 (MQ=255)                                                                                                             tCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGa                                   >  1:147100/1‑148 (MQ=255)                                                                                                               ggCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGacac                                >  5:128167/1‑149 (MQ=255)                                                                                                                gCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTgg                                                                                    <  8:70151/96‑1 (MQ=255)                                                                                                                 ccAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCg                              >  2:306019/1‑149 (MQ=255)                                                                                                                  cAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGACAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGa                                                                          <  6:164604/104‑1 (MQ=255)                                                                                                                  cAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGACAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGa                                                                          >  5:164604/1‑104 (MQ=255)                                                                                                                  cAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACACTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCgg                             >  4:311214/1‑149 (MQ=255)                                                                                                                    gggCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGgcg                           <  2:133545/149‑1 (MQ=255)                                                                                                                        gAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGCGCCGGTGTCGCCGGCCCgga                       <  6:177894/149‑2 (MQ=255)                                                                                                                        gAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGAGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGCGCCGGTGTCGCCGGCCCgga                       <  2:283951/149‑2 (MQ=255)                                                                                                                               gCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGtt                <  1:315927/149‑1 (MQ=255)                                                                                                                                  ggAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGTTTTc             <  5:123613/149‑1 (MQ=255)                                                                                                                                    aGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATTAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGTTTTCGt           >  2:220189/1‑149 (MQ=255)                                                                                                                                        ttGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGTTTTCGTTCAt       >  7:235691/1‑149 (MQ=255)                                                                                                                                             cagcagCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGTTTTCGTTCATTCGCa  >  7:58620/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             TTGGCCGCCATCACGTTGCGTTCGGCTGCAGCGATGTCCGGGCGCCGCTCCAGCAGCTGCGAAGGCAGCGAAACCGGTATTTGCGGCAACGCGGGAATCGCCTTGCTGTCGGCCAGGGCGAAGTCGGCCGGAGCCTTGCCCAGCAGCACGGCGATGGCGTTTTCGAACTGCGCACGCTGCCAGATCAGGTCAATCAGGTCAGCCTGGGTACTTTTGAGCTGCGTACGGGCCTGGGCCACGGCATCCGGGCCGGCGACACCGGCGCGGTACTGGTTTTCGTTCATTCGCA  >  NC_002947/4064995‑4065283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.