New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4095586 =	40 (0.770)	4 (0.080)	3/246	NT	9.4%	intergenic (‑103/‑83)	PP_3603/PP_5607	GntR family transcriptional regulator/membrane protein
	?	NC_002947	4095617 =	39 (0.800)					intergenic (‑134/‑52)	PP_3603/PP_5607	GntR family transcriptional regulator/membrane protein

GGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGG  >  NC_002947/4095438‑4095734                                                                                                                                                     |                                                                                                                                                     gggTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAAc                                                                                                                                                      <  5:259118/149‑1 (MQ=255) gggTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAAc                                                                                                                                                      <  5:273507/149‑1 (MQ=255)       ttGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAAcgcg                                                                                                                                                   >  8:72228/1‑146 (MQ=255)          ccTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGaa                                                                                                                                              >  7:280610/1‑148 (MQ=255)               aCCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTg                                                                                                                                        >  7:142490/1‑149 (MQ=255)                       ctctGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGTGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATgg                                                                                                                                >  5:224963/1‑149 (MQ=255)                       ctctGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCAttg                                                                                                                                >  5:86432/1‑147 (MQ=255)                                  cccTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTTTACGATCACATACCCCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                     <  4:270164/149‑1 (MQ=255)                                   ccTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                     <  2:104795/148‑1 (MQ=255)                                    cTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCct                                                                                                                   <  8:142490/149‑1 (MQ=255)                                     cagcagccagagggggatcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctg                                                                                                                  >  7:216111‑M1/113‑149 (MQ=255)                                     cagcagccagagggggatcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctg                                                                                                                  >  7:220397‑M1/113‑149 (MQ=255)                                       tATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgta                                                                                                                <  7:72228/149‑1 (MQ=255)                                         tttCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgtact                                                                                                              <  1:100787/149‑1 (MQ=255)                                            cACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCACATGGCCTGCGAGAGCctgtactgta                                                                                                           >  4:214229/1‑149 (MQ=255)                                                ttGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCACATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGcc                                                                                                       >  1:43165/1‑149 (MQ=255)                                                      tcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                     <  7:200630‑M1/34‑1 (MQ=255)                                                      tcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                     >  8:200630‑M1/96‑129 (MQ=255)                                                      gACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACg                                                                                                 >  3:230515/1‑149 (MQ=255)                                                      gACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACACCGTGCGGTATTTATTGCCAATATTTGCAGTACCTGGCCCCATGAAAAAACGAGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCATACACg                                                                                                 >  7:56381/1‑149 (MQ=255)                                                        cAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCATGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCt                                                                                               >  7:4644/1‑149 (MQ=255)                                                              tcatcaTAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTgcgc                                                                                                                         >  3:184104/1‑117 (MQ=255)                                                              tcatcaTAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTgcgc                                                                                                                         <  4:184104/117‑1 (MQ=255)                                                                    tAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                   >  3:127374/1‑149 (MQ=255)                                                                      gcgcAAGCGGTTGTACGATCACATACACCCCGTGCTGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATgg                                                                                  <  8:56381/148‑1 (MQ=255)                                                                       cgcAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATggaa                                                                                <  8:280610/149‑1 (MQ=255)                                                                                            aTACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgtactgta                                                                                                           >  1:102301/1‑101 (MQ=255)                                                                                            aTACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgtactgta                                                                                                           <  2:102301/101‑1 (MQ=255)                                                                                                        cGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCtt                                               <  4:127374/149‑1 (MQ=255)                                                                                                         ggTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCttt                                              >  2:29447/1‑149 (MQ=255)                                                                                                           tatttattGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTg                                            >  7:300511/1‑149 (MQ=255)                                                                                                              ttattGCCCATCTTTGCAGTCCATGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTc                                         >  3:319423/1‑149 (MQ=255)                                                                                                                    cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTTACTGTTCCATGGAAGGAATCTGCAGTa                                                                   <  1:181307/117‑1 (MQ=255)                                                                                                                    cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                   <  6:259652/101‑1 (MQ=255)                                                                                                                    cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                   >  5:259652/1‑101 (MQ=255)                                                                                                                    cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTa                                                                   >  2:181307/1‑117 (MQ=255)                                                                                                                    cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGt                                   >  4:161364/1‑149 (MQ=255)                                                                                                                    cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGt                                   >  8:136945/1‑149 (MQ=255)                                                                                                                     ccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTg                                  >  2:1458/1‑149 (MQ=255)                                                                                                                       aTCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGTCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGc                                >  3:73843/1‑149 (MQ=255)                                                                                                                            tGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCctgc                            <  3:214229/148‑1 (MQ=255)                                                                                                                               aGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGAt                        >  4:36873/1‑149 (MQ=255)                                                                                                                                    cTGGCCCCATGAAAAAACGCGCAGAATCACTGGTCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATccccc                   <  4:73843/149‑1 (MQ=255)                                                                                                                                    cTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTTCGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATccccc                   <  8:4644/149‑1 (MQ=255)                                                                                                                                          ccATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                   <  6:154173/79‑1 (MQ=255)                                                                                                                                          ccATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                   >  5:154173/1‑79 (MQ=255)                                                                                                                                             tGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGgctgc          <  8:300511/149‑1 (MQ=255)                                                                                                                                                aaaaaCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGa                         <  2:81121/131‑1 (MQ=255)                                                                                                                                                aaaaaCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGa                         >  1:81121/1‑131 (MQ=255)                                                                                                                                                     CGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCgggg  >  3:36873‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGGTCCTTGCCTGTACCTGCTGCTCTGTCATTGCCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGG  >  NC_002947/4095438‑4095734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.