New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4095586 =	40 (0.770)	4 (0.080)	3/246	NT	9.4%	intergenic (‑103/‑83)	PP_3603/PP_5607	GntR family transcriptional regulator/membrane protein
	?	NC_002947	4095617 =	39 (0.800)					intergenic (‑134/‑52)	PP_3603/PP_5607	GntR family transcriptional regulator/membrane protein

CCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTATGGCTCACCGCCCAG  >  NC_002947/4095471‑4095752                                                                                                                                                   |                                                                                                                                        cccTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTTTACGATCACATACCCCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                                       <  4:270164/149‑1 (MQ=255)  ccTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                                       <  2:104795/148‑1 (MQ=255)   cTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCct                                                                                                                                     <  8:142490/149‑1 (MQ=255)    cagcagccagagggggatcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctg                                                                                                                                    >  7:216111‑M1/113‑149 (MQ=255)    cagcagccagagggggatcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctg                                                                                                                                    >  7:220397‑M1/113‑149 (MQ=255)      tATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgta                                                                                                                                  <  7:72228/149‑1 (MQ=255)        tttCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgtact                                                                                                                                <  1:100787/149‑1 (MQ=255)           cACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCACATGGCCTGCGAGAGCctgtactgta                                                                                                                             >  4:214229/1‑149 (MQ=255)               ttGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCACATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGcc                                                                                                                         >  1:43165/1‑149 (MQ=255)                     tcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                                       >  8:200630‑M1/96‑129 (MQ=255)                     tcagcaggccactgccgagcaaaaggcggtcgagggttttcatactgcagattccttccatggaacagtgagcgtggaggcgtacagtacaggctCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGc                                                                                                                                       <  7:200630‑M1/34‑1 (MQ=255)                     gACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACg                                                                                                                   >  3:230515/1‑149 (MQ=255)                     gACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACACCGTGCGGTATTTATTGCCAATATTTGCAGTACCTGGCCCCATGAAAAAACGAGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCATACACg                                                                                                                   >  7:56381/1‑149 (MQ=255)                       cAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCATGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCt                                                                                                                 >  7:4644/1‑149 (MQ=255)                                   tAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                                     >  3:127374/1‑149 (MQ=255)                                     gcgcAAGCGGTTGTACGATCACATACACCCCGTGCTGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATgg                                                                                                    <  8:56381/148‑1 (MQ=255)                                      cgcAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATggaa                                                                                                  <  8:280610/149‑1 (MQ=255)                                                           aTACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgtactgta                                                                                                                             >  1:102301/1‑101 (MQ=255)                                                           aTACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCctgtactgta                                                                                                                             <  2:102301/101‑1 (MQ=255)                                                                       cGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCtt                                                                 <  4:127374/149‑1 (MQ=255)                                                                        ggTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCttt                                                                >  2:29447/1‑149 (MQ=255)                                                                          tatttattGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTg                                                              >  7:300511/1‑149 (MQ=255)                                                                             ttattGCCCATCTTTGCAGTCCATGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTc                                                           >  3:319423/1‑149 (MQ=255)                                                                                   cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTTACTGTTCCATGGAAGGAATCTGCAGTa                                                                                     <  1:181307/117‑1 (MQ=255)                                                                                   cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                                     <  6:259652/101‑1 (MQ=255)                                                                                   cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                                     >  5:259652/1‑101 (MQ=255)                                                                                   cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTa                                                                                     >  2:181307/1‑117 (MQ=255)                                                                                   cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGt                                                     >  4:161364/1‑149 (MQ=255)                                                                                   cccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGt                                                     >  8:136945/1‑149 (MQ=255)                                                                                    ccATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTg                                                    >  2:1458/1‑149 (MQ=255)                                                                                      aTCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGTCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGc                                                  >  3:73843/1‑149 (MQ=255)                                                                                           tGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCctgc                                              <  3:214229/148‑1 (MQ=255)                                                                                              aGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGAt                                          >  4:36873/1‑149 (MQ=255)                                                                                                   cTGGCCCCATGAAAAAACGCGCAGAATCACTGGTCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATccccc                                     <  4:73843/149‑1 (MQ=255)                                                                                                   cTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTTCGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATccccc                                     <  8:4644/149‑1 (MQ=255)                                                                                                         ccATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                                     <  6:154173/79‑1 (MQ=255)                                                                                                         ccATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATg                                                                                                     >  5:154173/1‑79 (MQ=255)                                                                                                            tGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGgctgc                            <  8:300511/149‑1 (MQ=255)                                                                                                              caggctcgcgcaggccatgggccagtgattctgcgcgAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGctgctg                          >  7:216111‑M2/38‑149 (MQ=255)                                                                                                              caggctcgcgcaggccatgggccagtgattctgcgcgAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGctgctg                          >  7:220397‑M2/38‑149 (MQ=255)                                                                                                               aaaaaCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGa                                           >  1:81121/1‑131 (MQ=255)                                                                                                               aaaaaCGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGa                                           <  2:81121/131‑1 (MQ=255)                                                                                                                 gctcgcgcaggccatgggccagtgattctgcgcgAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGa                                           >  8:200630‑M2/35‑129 (MQ=255)                                                                                                                 gctcgcgcaggccatgggccagtgattctgcgcgAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGa                                           <  7:200630‑M2/95‑1 (MQ=255)                                                                                                                    CGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCgggg                    >  3:36873‑M1/1‑149 (MQ=255)                                                                                                                       GCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATg                                                                                   <  3:270925‑M1/83‑1 (MQ=255)                                                                                                                       GCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATg                                                                                   >  4:270925‑M1/1‑83 (MQ=255)                                                                                                                       GCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTa                 <  6:162460‑M1/149‑1 (MQ=255)                                                                                                                              cACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTATgg              >  7:197157/1‑145 (MQ=255)                                                                                                                              cACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTATgg              <  8:197157/145‑1 (MQ=255)                                                                                                                               aCTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTg                                                    >  6:323793/1‑106 (MQ=255)                                                                                                                               aCTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTg                                                    <  5:323793/106‑1 (MQ=255)                                                                                                                               aCTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTATGGCTCAc         >  1:127678/1‑149 (MQ=255)                                                                                                                                      cATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTATGGCTCACCGCCCAg  <  6:224963/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                        CCCTGTATTTCACCTTGGAAGACAGCGCTCATCATAGCGCAAGCGGTTGTACGATCACATACACCCCGTGCGGTATTTATTGCCCATCTTTGCAGTCCCTGGCCCCATGAAAAAACGCGCAGAATCACTGGCCCATGGCCTGCGCGAGCCTGTACTGTACGCCTCCACGCTCACTGTTCCATGGAAGGAATCTGCAGTATGAAAACCCTCGACCGCCTTTTGCTCGGCAGTGGCCTGCTGATCCCCCTCTGGCTGCTGGCGGGGGTATGGCTCACCGCCCAG  >  NC_002947/4095471‑4095752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.