New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4502497 =	53 (1.030)	3 (0.060)	3/250	NT	5.9%	coding (126/1380 nt)	xanP	xanthine permease
	?	NC_002947	4502554 =	45 (0.910)					coding (183/1380 nt)	xanP	xanthine permease

CTTCCGGGGCGGCTTTCAGCAATGAGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGG  >  NC_002947/4502351‑4502644                                                                                                                                                   |                                                                                                                                                    cgccggcaatcagcgggccgacgaagttgaagctggtgccctgaacgatcagcagccccgcgccaaatgggccgaagcgtttgcactggacgaaggtggcgatacccgagatcaccagcgacatcgaaacgatcaaattggtatcaCGt                                                                                                                                                   <  6:224766‑M1/3‑1 (MQ=255)      ggggCGGCTTTCAGCAATGAGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGa                                                                                                                                              >  2:222808/1‑149 (MQ=255)          cggcTTTCAGCAATGAGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGt                                                                                                                                          >  4:33256/1‑149 (MQ=255)            gcTTTCAGCAATGAGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCa                                                                                                                                        <  5:21583/149‑1 (MQ=255)                     aaTGAGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGcc                                                                                                                               >  7:62870/1‑149 (MQ=255)                         aGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCctgct                                                                                                                           <  1:222808/149‑1 (MQ=255)                          gCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCctgct                                                                                                                           >  2:243893/1‑148 (MQ=255)                              acacGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCa                                                                                                                                        >  2:205332/1‑131 (MQ=255)                              acacGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCa                                                                                                                                        <  1:205332/131‑1 (MQ=255)                              acacGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGAt                                                                                                                        <  2:222856/147‑1 (MQ=255)                              acacGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCt                                                                                                                      >  1:245540/1‑149 (MQ=255)                              acacGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCt                                                                                                                      >  3:92612/1‑149 (MQ=255)                                 cGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGcc                                                                                                                   <  6:124297/149‑1 (MQ=255)                                         gCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTg                                                                                                           <  1:45772/149‑1 (MQ=255)                                           ccAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGcc                                                                                                                                                <  4:50782/110‑1 (MQ=255)                                           ccAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGcc                                                                                                                                                >  3:50782/1‑110 (MQ=255)                                            cAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGgt                                                                                                        <  4:281745/149‑1 (MQ=255)                                            cAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTAGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGgt                                                                                                        <  1:146652/149‑1 (MQ=255)                                             aGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGgtg                                                                                                       >  6:131178/1‑149 (MQ=255)                                                 gcAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTAt                                                                                                    <  2:317090/148‑1 (MQ=255)                                                    gcagccccgcgccaaatgggccgaagcgtttgcactggacgaaggtggcgatacccgagatcaccagcgacatcgaaacgatcaaattggtatcaCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGc                                                                                                               >  8:263082‑M1/96‑134 (MQ=255)                                                    gcagccccgcgccaaatgggccgaagcgtttgcactggacgaaggtggcgatacccgagatcaccagcgacatcgaaacgatcaaattggtatcaCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGc                                                                                                               <  7:263082‑M1/39‑1 (MQ=255)                                                       gcgcCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCctgc                                                                                                                            >  6:236267/1‑118 (MQ=255)                                                          ccTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGa                                                                                          <  3:75245/149‑1 (MQ=255)                                                            tGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATa                                                                                        >  3:190399/1‑149 (MQ=255)                                                            tGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATa                                                                                        >  6:28888/1‑149 (MQ=255)                                                            gcgccaaatgggccgaagcgtttgcactggacgaaggtggcgatacccgagatcaccagcgacatcgaaacgatcaaattggtatcaCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATa                                                                                        >  3:286237‑M1/88‑149 (MQ=255)                                                              ccAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATAc                                                                                       <  5:131178/148‑1 (MQ=255)                                                                 aTGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGGGAGACCaag                                                                                   >  8:117049/1‑148 (MQ=255)                                                                 aTGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCAGATCGTCACGCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAAt                                                                                   <  4:190399/149‑1 (MQ=255)                                                                       tGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTg                                                                                >  3:300552/1‑146 (MQ=255)                                                                       tGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTg                                                                                <  4:300552/146‑1 (MQ=255)                                                                       tGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATc                                                                             >  5:137634/1‑149 (MQ=255)                                                                          tGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGtt                                                                          <  3:33256/149‑1 (MQ=255)                                                                              tGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGa                                                                      >  5:224766/1‑149 (MQ=255)                                                                               ggTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGa                                                                      <  4:92612/148‑1 (MQ=255)                                                                                 tCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGt                                                                   <  6:137634/149‑1 (MQ=255)                                                                                           aaGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGAt                                                         >  5:333374/1‑149 (MQ=255)                                                                                           aaGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGATGGTGAt                                                         >  6:242886/1‑149 (MQ=255)                                                                                             gCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGGTTCGATGTCGCTGGTGAtct                                                       >  6:191132/1‑149 (MQ=255)                                                                                                aCGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAAtt                                                                                  >  2:152691/1‑119 (MQ=255)                                                                                                aCGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAAtt                                                                                  <  1:152691/119‑1 (MQ=255)                                                                                                aCGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCgg                                                    <  6:333374/149‑1 (MQ=255)                                                                                                       ttGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGc                                             <  3:90977/149‑1 (MQ=255)                                                                                                          aTCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCa                                           <  8:62870/148‑1 (MQ=255)                                                                                                          aTCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCAc                                          <  5:28888/149‑1 (MQ=255)                                                                                                           tCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCAcc                                         >  7:252150/1‑149 (MQ=255)                                                                                                            cGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGACCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCg                                                     >  2:127981/1‑136 (MQ=255)                                                                                                            cGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGACCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCg                                                     <  1:127981/136‑1 (MQ=255)                                                                                                              gCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTc                                      <  8:252150/149‑1 (MQ=255)                                                                                                                 tgctgGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTc                                   >  8:159797/1‑149 (MQ=255)                                                                                                                   ctgGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTc                                   <  8:215566/147‑1 (MQ=255)                                                                                                                      gCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCt                                        <  4:229734/139‑1 (MQ=255)                                                                                                                      gCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCt                                        >  3:229734/1‑139 (MQ=255)                                                                                                                      gCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGt                               <  2:245540/148‑1 (MQ=255)                                                                                                                                  caCCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCgg                  >  7:145509/1‑149 (MQ=255)                                                                                                                                             gATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGgcg       >  5:39497/1‑149 (MQ=255)                                                                                                                                                  tcGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCgggg  >  3:92998/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTTCCGGGGCGGCTTTCAGCAATGAGCTCACACGAACACAGCCCAGGCGCAGGGGCGCCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGG  >  NC_002947/4502351‑4502644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.