New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4502497 =	53 (1.030)	3 (0.060)	3/250	NT	5.9%	coding (126/1380 nt)	xanP	xanthine permease
	?	NC_002947	4502554 =	45 (0.910)					coding (183/1380 nt)	xanP	xanthine permease

CCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACTTCGTCGGCCCGCTGATTGCCGGCG  >  NC_002947/4502408‑4502699                                                                                                                                                   |                                                                                                                                                  ccTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGa                                                                                                                                                 <  3:75245/149‑1 (MQ=255)   tGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATa                                                                                                                                               >  6:28888/1‑149 (MQ=255)   tGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATa                                                                                                                                               >  3:190399/1‑149 (MQ=255)   gcgccaaatgggccgaagcgtttgcactggacgaaggtggcgatacccgagatcaccagcgacatcgaaacgatcaaattggtatcaCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATa                                                                                                                                               >  3:286237‑M1/88‑149 (MQ=255)     ccAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATAc                                                                                                                                              <  5:131178/148‑1 (MQ=255)        aTGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGGGAGACCaag                                                                                                                                          >  8:117049/1‑148 (MQ=255)        aTGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCAGATCGTCACGCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAAt                                                                                                                                          <  4:190399/149‑1 (MQ=255)              tGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTg                                                                                                                                       >  3:300552/1‑146 (MQ=255)              tGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTg                                                                                                                                       <  4:300552/146‑1 (MQ=255)              tGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATc                                                                                                                                    >  5:137634/1‑149 (MQ=255)                 tGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGtt                                                                                                                                 <  3:33256/149‑1 (MQ=255)                     tGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGa                                                                                                                             >  5:224766/1‑149 (MQ=255)                      ggTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGa                                                                                                                             <  4:92612/148‑1 (MQ=255)                        tCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGt                                                                                                                          <  6:137634/149‑1 (MQ=255)                                  aaGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGAt                                                                                                                >  5:333374/1‑149 (MQ=255)                                  aaGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGATGGTGAt                                                                                                                >  6:242886/1‑149 (MQ=255)                                    gCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGGTTCGATGTCGCTGGTGAtct                                                                                                              >  6:191132/1‑149 (MQ=255)                                       aCGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAAtt                                                                                                                                         >  2:152691/1‑119 (MQ=255)                                       aCGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAAtt                                                                                                                                         <  1:152691/119‑1 (MQ=255)                                       aCGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCgg                                                                                                           <  6:333374/149‑1 (MQ=255)                                              ttGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGc                                                                                                    <  3:90977/149‑1 (MQ=255)                                                 aTCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCa                                                                                                  <  8:62870/148‑1 (MQ=255)                                                 aTCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCAc                                                                                                 <  5:28888/149‑1 (MQ=255)                                                  tCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCAcc                                                                                                >  7:252150/1‑149 (MQ=255)                                                   cGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGACCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCg                                                                                                            <  1:127981/136‑1 (MQ=255)                                                   cGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGACCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCg                                                                                                            >  2:127981/1‑136 (MQ=255)                                                     gCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTc                                                                                             <  8:252150/149‑1 (MQ=255)                                                        tgctgGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTc                                                                                          >  8:159797/1‑149 (MQ=255)                                                          ctgGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTc                                                                                          <  8:215566/147‑1 (MQ=255)                                                             gCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCt                                                                                               <  4:229734/139‑1 (MQ=255)                                                             gCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCt                                                                                               >  3:229734/1‑139 (MQ=255)                                                             gCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGt                                                                                      <  2:245540/148‑1 (MQ=255)                                                                         caCCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCgg                                                                         >  7:145509/1‑149 (MQ=255)                                                                                    gATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGgcg                                                              >  5:39497/1‑149 (MQ=255)                                                                                     tatcacgtgcagatacacccaacgcctggcagatcagcaggccaggggtgacgatcggcacgTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGgcgc                                                             >  3:286237‑M2/63‑149 (MQ=255)                                                                                         tcGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCgggg                                                         >  3:92998/1‑149 (MQ=255)                                                                                            TGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCt                                                                                               <  7:280702‑M1/108‑1 (MQ=255)                                                                                            TGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCt                                                                                               >  8:280702‑M1/1‑108 (MQ=255)                                                                                            TGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGgctg                                                      >  4:92998‑M1/1‑149 (MQ=255)                                                                                              CCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGCTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGgctgct                                                    >  5:191132‑M1/1‑149 (MQ=255)                                                                                                       aCCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGttt                                                                                                                                >  5:32047/1‑64 (MQ=255)                                                                                                       aCCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGttt                                                                                                                                <  6:32047/64‑1 (MQ=255)                                                                                                         cccTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTTGCGCGGGGCTGCTGATCGTTCa                                           >  1:130578/1‑147 (MQ=255)                                                                                                           cTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAggg                                        >  1:248159/1‑148 (MQ=255)                                                                                                           cTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGc                                       <  8:145509/149‑1 (MQ=255)                                                                                                            gcctggcagatcagcaggccaggggtgacgatcggcacgTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGgctgc                                                     >  8:263082‑M2/40‑134 (MQ=255)                                                                                                            gcctggcagatcagcaggccaggggtgacgatcggcacgTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGgctgc                                                     <  7:263082‑M2/95‑1 (MQ=255)                                                                                                              gCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGgctgc                                                     >  4:66450/1‑132 (MQ=255)                                                                                                              gCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGgctgc                                                     <  3:66450/132‑1 (MQ=255)                                                                                                              gCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCAc                                     <  7:159797/148‑1 (MQ=255)                                                                                                                     gATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTc                              >  8:53920/1‑148 (MQ=255)                                                                                                                      aTCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCgg                                                           >  4:310174/1‑118 (MQ=255)                                                                                                                      aTCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTc                              <  1:243893/147‑1 (MQ=255)                                                                                                                         tGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACtt                         >  4:256699/1‑149 (MQ=255)                                                                                                                            cAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACTtcgt                      >  4:48422/1‑149 (MQ=255)                                                                                                                                      gtgtATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACTTCGTCGGCCCGCTg            <  6:39497/149‑1 (MQ=255)                                                                                                                                           tCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACTTCGTCGGCCCGCTGATTGc       >  7:289473/1‑149 (MQ=255)                                                                                                                                             tGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGTTGCTGATCGTTCAGGGCACCAGCTTCAACTTCGTCGGCCCGCTGATTGCcg     >  1:22491/1‑149 (MQ=255)                                                                                                                                                acgTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACTTCGTCGGCCCGCTGATTGCcggcg  <  6:224766‑M2/146‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CCTGCCAATGAACTGGTGCTTGGTCTGGAGGACAAGCCACGGCTGTTGATCGGCCTGCTGGCAGCCCTGCAGCACCTGCTGGCGATCATCGTGCCGATCGTCACCCCTGGCCTGCTGATCTGCCAGGCGTTGGGTGTATCTGCACGTGATACCAATTTGATCGTTTCGATGTCGCTGGTGATCTCGGGTATCGCCACCTTCGTCCAGTGCAAACGCTTCGGCCCATTTGGCGCGGGGCTGCTGATCGTTCAGGGCACCAGCTTCAACTTCGTCGGCCCGCTGATTGCCGGCG  >  NC_002947/4502408‑4502699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.