New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4852078	42 (0.810)	4 (0.080)	4/250	NT	8.8%	coding (252/603 nt)	recR	recombination protein RecR
	?	NC_002947	= 4852106	43 (0.870)					coding (224/603 nt)	recR	recombination protein RecR

TTCGATCCGCGCCATCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCG  >  NC_002947/4851937‑4852225                                                                                                                                              |                                                                                                                                                    ttCGATCCGCGCCATCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCcgcgccg                                                                                                                                              >  3:186971‑M1/1‑142 (MQ=255)      tCCGCGCCATCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCtgt                                                                                                                                         <  5:31373/149‑1 (MQ=255)         gcgcCATCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCtgtgtg                                                                                                                                      >  6:257978/1‑149 (MQ=255)            ccATCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTgtcg                                                                                                                                   <  6:152039/149‑1 (MQ=255)               tCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCa                                                                                                                                <  5:179594/149‑1 (MQ=255)                 aGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACg                                                                                                                              <  4:298580/149‑1 (MQ=255)                   cTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGgc                                                                                                                            >  6:248157/1‑149 (MQ=255)                   cTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCACATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGgc                                                                                                                            <  2:162902/149‑1 (MQ=255)                     gCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGgcgc                                                                                                                          <  6:221374/149‑1 (MQ=255)                      cGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGgcgc                                                                                                                          <  2:238112/148‑1 (MQ=255)                        gAATACCGATTGCCTCAGGCCCCATGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGgg                                                                                                                       <  1:195136‑M2/149‑3 (MQ=255)                          aTACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                        >  6:155615‑M2/1‑145 (MQ=255)                          aTACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                        <  5:155615‑M2/146‑2 (MQ=255)                             ccGTTTGCCTCCGGCCCCAGGCCATCCCGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCcgcgccgtgacgacacacagctgtgcgtggtcga                                                                                                                   <  7:203416‑M1/148‑35 (MQ=255)                              cGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGgcg                                                                                                                 >  7:162465/1‑149 (MQ=255)                               gATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCcgcgccgtgacgacacacagctgtgcgtggtcgaggg                                                                                                                <  4:186971‑M1/149‑38 (MQ=255)                               gATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGgcgc                                                                                                                <  2:228295/149‑1 (MQ=255)                                  tGCCGCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCcgcgccgtgacgacacacagctgtgcgtggtcgaggggc                                                                                                              <  4:18516‑M1/148‑40 (MQ=255)                                     cTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCg                                                                                                          >  7:138756/1‑149 (MQ=255)                                        aGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCggg                                                                                                        <  6:156769/148‑1 (MQ=255)                                        aGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGc                                                                                                       <  2:292260/149‑1 (MQ=255)                                            cccAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAg                                                                                                   <  8:162465/149‑1 (MQ=255)                                                 cccATCCAGCCGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCt                                                                                              <  8:67604/148‑1 (MQ=255)                                                            gcgACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAgg                                                                                   <  7:146731/149‑1 (MQ=255)                                                                   gTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                        <  4:312471‑M2/105‑2 (MQ=255)                                                                   gTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                        >  3:312471‑M2/1‑104 (MQ=255)                                                                         cTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTggc                                                                      <  7:76572/149‑1 (MQ=255)                                                                         cTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTggc                                                                      <  5:248157/149‑1 (MQ=255)                                                                                  gAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGcc                                                             >  3:257567/1‑149 (MQ=255)                                                                                      gaaCGGCCACGGTAGCCAGTCTGCTCCACCGCATACACCTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTAc                                                         <  4:52544/148‑1 (MQ=255)                                                                                        aCGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCtgt                                                                                                                                         >  6:3168/1‑67 (MQ=255)                                                                                        aCGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCtgt                                                                                                                                         <  5:3168/67‑1 (MQ=255)                                                                                                        gTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTg                                                                                             <  2:283158/95‑1 (MQ=255)                                                                                                        gTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTg                                                                                             >  1:283158/1‑95 (MQ=255)                                                                                                             cTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCAAGGCCTGGGTCAAgg                                  >  6:244245/1‑149 (MQ=255)                                                                                                               ccACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGcc                                >  2:229622/1‑149 (MQ=255)                                                                                                                cACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCt                               >  6:44163/1‑149 (MQ=255)                                                                                                                  ccGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGCCGTCACGGCGCGGGGCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGa                             <  6:194572/149‑1 (MQ=255)                                                                                                                      aTACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCt                                                     >  7:57101/1‑121 (MQ=255)                                                                                                                      aTACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCt                                                     <  8:57101/121‑1 (MQ=255)                                                                                                                       tACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAg                        <  5:257978/149‑1 (MQ=255)                                                                                                                       tACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAg                        <  2:195136/149‑1 (MQ=255)                                                                                                                         cacaTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGCTCAGGCCTTGACCCAGgc                      <  5:4650/149‑1 (MQ=255)                                                                                                                           caTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGgcg                     >  1:180081/1‑148 (MQ=255)                                                                                                                           caTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGgcg                     <  2:180081/148‑1 (MQ=255)                                                                                                                            aTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGgcg                     >  4:114555/1‑147 (MQ=255)                                                                                                                               ggtcggCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGcc                >  4:301539/1‑149 (MQ=255)                                                                                                                               ggtcggCCCCTCGACCACGCACAGCTGAGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCACGCGCAGcc                >  6:161421/1‑149 (MQ=255)                                                                                                                                    gCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgcggca            <  4:18516‑M2/148‑110 (MQ=255)                                                                                                                                    gCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCa           >  5:303012/1‑149 (MQ=255)                                                                                                                                      cccTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgaggcaatc         <  4:186971‑M2/149‑113 (MQ=255)                                                                                                                                       ccTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTg        >  5:305447/1‑149 (MQ=255)                                                                                                                                       ccTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTg        >  7:215185/1‑149 (MQ=255)                                                                                                                                         tCGACCACGCACAGCTGTGTGTCGTCACGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgcgggatggcctggggccggaggcaaacgg       <  7:203416‑M2/148‑115 (MQ=255)                                                                                                                                           gACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCAt                                                <  8:257260/105‑1 (MQ=255)                                                                                                                                           gACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCAt                                                >  7:257260/1‑105 (MQ=255)                                                                                                                                             cccgcgccgtgacgacacacagctgtgcgtggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcatggggcctgaggcaatcggtattc  <  1:195136‑M1/149‑148 (MQ=255)                                                                                                                                              ccgcgccgtgacgacacacagctgtgcgtggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgaggcaatcggtat    <  5:155615‑M1/146‑146 (MQ=255)                                                                                                                                              ccgcgccgtgacgacacacagctgtgcgtggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgaggcaatcggtat    >  6:155615‑M1/1‑1 (MQ=255)                                                                                                                                              ccgcgccgtgacgacacacagctgtgcgtggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcac                                             >  3:312471‑M1/1‑1 (MQ=255)                                                                                                                                              ccgcgccgtgacgacacacagctgtgcgtggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcac                                             <  4:312471‑M1/105‑105 (MQ=255)                                                                                                                                              |                                                                                                                                                    TTCGATCCGCGCCATCAGCTGCGGAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCG  >  NC_002947/4851937‑4852225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.