New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4852078	42 (0.810)	4 (0.080)	4/250	NT	8.8%	coding (252/603 nt)	recR	recombination protein RecR
	?	NC_002947	= 4852106	43 (0.870)					coding (224/603 nt)	recR	recombination protein RecR

GAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAGGGCCAT  >  NC_002947/4851960‑4852248                                                                                                                                                   |                                                                                                                                                gAATACCGATTGCCTCAGGCCCCATGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGgg                                                                                                                                               <  1:195136‑M2/149‑3 (MQ=255)   aTACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                                                >  6:155615‑M2/1‑145 (MQ=255)   aTACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                                                <  5:155615‑M2/146‑2 (MQ=255)       cGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGgcg                                                                                                                                         >  7:162465/1‑149 (MQ=255)        gATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGgcgc                                                                                                                                        <  2:228295/149‑1 (MQ=255)              cTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCg                                                                                                                                  >  7:138756/1‑149 (MQ=255)                 aGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCggg                                                                                                                                <  6:156769/148‑1 (MQ=255)                 aGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGc                                                                                                                               <  2:292260/149‑1 (MQ=255)                     cccAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAg                                                                                                                           <  8:162465/149‑1 (MQ=255)                          cccATCCAGCCGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCt                                                                                                                     <  8:67604/148‑1 (MQ=255)                                     gcgACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAgg                                                                                                          <  7:146731/149‑1 (MQ=255)                                            gTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                                                <  4:312471‑M2/105‑2 (MQ=255)                                            gTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGg                                                                                                                                                >  3:312471‑M2/1‑104 (MQ=255)                                                  cTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTggc                                                                                             <  5:248157/149‑1 (MQ=255)                                                  cTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTggc                                                                                             <  7:76572/149‑1 (MQ=255)                                                           gAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGcc                                                                                    >  3:257567/1‑149 (MQ=255)                                                               gaaCGGCCACGGTAGCCAGTCTGCTCCACCGCATACACCTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTAc                                                                                <  4:52544/148‑1 (MQ=255)                                                                                 gTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTg                                                                                                                    <  2:283158/95‑1 (MQ=255)                                                                                 gTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTg                                                                                                                    >  1:283158/1‑95 (MQ=255)                                                                                      cTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCAAGGCCTGGGTCAAgg                                                         >  6:244245/1‑149 (MQ=255)                                                                                        ccACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGcc                                                       >  2:229622/1‑149 (MQ=255)                                                                                         cACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCt                                                      >  6:44163/1‑149 (MQ=255)                                                                                           ccGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGCCGTCACGGCGCGGGGCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGa                                                    <  6:194572/149‑1 (MQ=255)                                                                                               aTACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCt                                                                            >  7:57101/1‑121 (MQ=255)                                                                                               aTACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCt                                                                            <  8:57101/121‑1 (MQ=255)                                                                                                tACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAg                                               <  2:195136/149‑1 (MQ=255)                                                                                                tACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAg                                               <  5:257978/149‑1 (MQ=255)                                                                                                  cacaTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGCTCAGGCCTTGACCCAGgc                                             <  5:4650/149‑1 (MQ=255)                                                                                                    caTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGgcg                                            >  1:180081/1‑148 (MQ=255)                                                                                                    caTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGgcg                                            <  2:180081/148‑1 (MQ=255)                                                                                                     aTCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGgcg                                            >  4:114555/1‑147 (MQ=255)                                                                                                        ggtcggCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGcc                                       >  4:301539/1‑149 (MQ=255)                                                                                                        ggtcggCCCCTCGACCACGCACAGCTGAGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCACGCGCAGcc                                       >  6:161421/1‑149 (MQ=255)                                                                                                             gCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgcggca                                    <  4:18516‑M2/148‑110 (MQ=255)                                                                                                             gCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCa                                  >  5:303012/1‑149 (MQ=255)                                                                                                               cccTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgaggcaatc                                 <  4:186971‑M2/149‑113 (MQ=255)                                                                                                                ccTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTg                               >  5:305447/1‑149 (MQ=255)                                                                                                                ccTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTg                               >  7:215185/1‑149 (MQ=255)                                                                                                                  tCGACCACGCACAGCTGTGTGTCGTCACGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgcgggatggcctggggccggaggcaaacgg                               <  7:203416‑M2/148‑115 (MQ=255)                                                                                                                    gACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCAt                                                                       >  7:257260/1‑105 (MQ=255)                                                                                                                    gACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCAt                                                                       <  8:257260/105‑1 (MQ=255)                                                                                                                          gCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCt                     >  8:251036/1‑149 (MQ=255)                                                                                                                            acaGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTc                    >  5:33286/1‑148 (MQ=255)                                                                                                                            acaGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCg                   <  7:251036/149‑1 (MQ=255)                                                                                                                                cTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCTGCCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCGTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAg                 >  1:69245/1‑148 (MQ=255)                                                                                                                                cTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAg                 >  1:116378/1‑147 (MQ=255)                                                                                                                                       tcgtcACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAg        >  3:306443/1‑149 (MQ=255)                                                                                                                                       tcgtcACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAg        <  6:305447/149‑1 (MQ=255)                                                                                                                                       tcgtcACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAg        <  8:215185/149‑1 (MQ=255)                                                                                                                                         gtcACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAggg      <  3:114555/149‑1 (MQ=255)                                                                                                                                         gtcACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAggg      >  8:116760/1‑149 (MQ=255)                                                                                                                                          tcACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAGGGc     >  3:144990/1‑149 (MQ=255)                                                                                                                                             cGGCGCGggtcgaggggccgaccgatgtgtatgcggtggagcagactggctaccgtggccgttacttcgtgctcaaggggcacctgtcgccgctggatggcctggggcctgaggcaatcggtattccgcagctgatggcgcggatcgaa   >  3:186971‑M2/1‑7 (MQ=255)                                                                                                                                             cGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAGGGCCAt  <  6:97652/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GAATACCGATTGCCTCAGGCCCCAGGCCATCCAGCGGCGACAGGTGCCCCTTGAGCACGAAGTAACGGCCACGGTAGCCAGTCTGCTCCACCGCATACACATCGGTCGGCCCCTCGACCACGCACAGCTGTGTGTCGTCACGGCGCGGGTCGGCGCACTGCGGGCACAGCT‑CCTGCTCGGTGAGGGTGCGACACTGGCGGCAATGCCCTACCCCTTCCATGGCCTGGGTCAAGGCCTGAGCCAGGCGCAGCCCGCCACTGCGGTCGCGCTCGAGCAGTTGCAGGGCCAT  >  NC_002947/4851960‑4852248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.