New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5612120	44 (0.850)	6 (0.120)	5/246	NT	12.2%	coding (1114/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	= 5612156	45 (0.920)					coding (1150/1176 nt)	PP_4931	hypothetical protein

CACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAG  >  NC_002947/5611980‑5612265                                                                                                                                             |                                                                                                                                                  cACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTgacc                                                                                                                                           <  3:169355/149‑1 (MQ=255)   cGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTgaccga                                                                                                                                         <  8:109708/149‑1 (MQ=255)    gCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTgaccgac                                                                                                                                        >  7:12139/1‑149 (MQ=255)              cGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGcc                                                                                                                              >  2:124777/1‑149 (MQ=255)               gCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGccc                                                                                                                             >  6:279414/1‑149 (MQ=255)                      ttGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGgtacgcccagcggagggcgtggcaggtcg                                                                                                                      >  2:140557‑M1/1‑120 (MQ=255)                          cGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCGGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCg                                                                                                                  >  4:61342/1‑149 (MQ=255)                          cGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGAc                                                                                                                                                 <  8:292360/118‑1 (MQ=255)                          cGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGAc                                                                                                                                                 >  7:292360/1‑118 (MQ=255)                              cagcagCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTggg                                                                                                                    >  8:28675/1‑143 (MQ=255)                              cagcagCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTggg                                                                                                                    <  7:28675/143‑1 (MQ=255)                                 cagcGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggc                                                                                                           <  2:135405‑M2/149‑5 (MQ=255)                                     gcCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGgtacgcccagcggagggcgtggcaggtcggtcaggtcggcctgt                                                                                                       <  1:140557‑M1/149‑45 (MQ=255)                                        tgctgcTGGGCTGCCCGACCAAACTCGCACTGGCACCCGACATCAGCCACCGGGTAATCAGCCACCTGGAGCGCGACCGCATTCGTCCACAAGCACACGCCGACCTGACCGACCTGCCACGCCCACCGCTGGGCGTACCGGCCTCGGAg                                                                                                    >  1:96590/1‑149 (MQ=255)                                                ggCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAActgct                                                                                            <  4:218141/149‑1 (MQ=255)                                                   tGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACtgctgc                                                                                          >  8:45198/1‑148 (MQ=255)                                                     gCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACGTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGGCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCAt                                                                                       <  8:12139/149‑1 (MQ=255)                                                     gCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGcc                                                                                         <  5:279414/147‑1 (MQ=255)                                                     gCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCAt                                                                                       >  5:271423/1‑149 (MQ=255)                                                       cGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAActgct                                                                                            <  7:228934/142‑1 (MQ=255)                                                       cGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAActgct                                                                                            >  8:228934/1‑142 (MQ=255)                                                           cAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACTGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGc                                                                                                                   >  1:104436/1‑115 (MQ=255)                                                           cAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGc                                                                                                                   <  2:104436/115‑1 (MQ=255)                                                             aaCTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGc                                                                               >  4:119695/1‑149 (MQ=255)                                                                tggcactggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGgtacgcccagcggagggcgtggcaggtcggtcaggtcggcctgt                                                                                                       >  4:259278‑M1/1‑78 (MQ=255)                                                                tggcactggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGgtacgcccagcggagggcgtggcaggtcggtcaggtcggcctgt                                                                                                       <  3:259278‑M1/122‑45 (MQ=255)                                                                  gcactggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCaa                                                                            <  7:45198/147‑1 (MQ=255)                                                                  gcactggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACAGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAAcc                                                                          >  5:218168/1‑149 (MQ=255)                                                                      tggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGCCGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTg                                                                       >  6:158040/1‑148 (MQ=255)                                                                        gcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCAc                                                                    <  1:124777/149‑1 (MQ=255)                                                                           ccGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTgg                                                                                                                     >  2:20328/1‑97 (MQ=255)                                                                           ccGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTgg                                                                                                                     <  1:20328/97‑1 (MQ=255)                                                                                 ttCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGgtacgcccagcggagggcgtggcaggtcggtcaggtcggcctgtgc                                                                                                     <  4:256747‑M1/107‑47 (MQ=255)                                                                                 ttCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGgtacgcccagcggagggcgtggcaggtcggtcaggtcggcctgtgc                                                                                                     >  3:256747‑M1/1‑61 (MQ=255)                                                                                 ttCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCAt                                                           >  4:61732/1‑149 (MQ=255)                                                                                    aGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCg                                                         <  1:135405/148‑1 (MQ=255)                                                                                           gggTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTgg                                                 <  6:218168/149‑1 (MQ=255)                                                                                            ggTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGa                                                                                                     <  4:214870/96‑1 (MQ=255)                                                                                            ggTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGa                                                                                                     >  3:214870/1‑96 (MQ=255)                                                                                             gTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTggg                                                >  5:90609/1‑148 (MQ=255)                                                                                             gTAATAAGCCTCCTGCAGCGCGACGTCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGTAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGgc                                               <  8:1263/149‑1 (MQ=255)                                                                                                    gCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGc                                                                      <  1:115705/119‑1 (MQ=255)                                                                                                    gCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCACTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGc                                                                      >  2:115705/1‑119 (MQ=255)                                                                                                      cACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGc                                      <  3:61342/149‑1 (MQ=255)                                                                                                            gAGCGCGACGGGTTTCGTCCTCTAGCACAGGCGGACCTGACCGACCTGCCACGCCGTCCGGTGGGCGTAGCGGGCTGGTAGCATCTGCTGCCATGTGCCTGGCAACCCTGGACGGTTTCCATCGCCCGGTGGGCAGCACGGGCGTCaa                                 <  2:96590/148‑1 (MQ=255)                                                                                                            gAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCaa                                 <  4:112270/148‑1 (MQ=255)                                                                                                                  gACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAg                                >  6:235242/1‑143 (MQ=255)                                                                                                                  gACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAg                                <  5:235242/143‑1 (MQ=255)                                                                                                                     ggCATTCGTCCACAAGCACAGGCCGACCTGACAGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGACTCGCCa                       >  7:148787/1‑149 (MQ=255)                                                                                                                       cATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACt                     <  6:271423/149‑1 (MQ=255)                                                                                                                               cacaAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCg             >  8:154823/1‑149 (MQ=255)                                                                                                                                acaAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCgg            >  6:125897/1‑149 (MQ=255)                                                                                                                                    gCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaa                                                  >  3:256747‑M2/1‑46 (MQ=255)                                                                                                                                    gCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaa                                                  <  4:256747‑M2/107‑62 (MQ=255)                                                                                                                                    gCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACg        >  7:29422/1‑149 (MQ=255)                                                                                                                                      acaGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgccagtttggtcggccagcccaccagcaggc      <  1:140557‑M2/149‑106 (MQ=255)                                                                                                                                      acaGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgcca                                 <  3:259278‑M2/122‑79 (MQ=255)                                                                                                                                      acaGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgcca                                 >  4:259278‑M2/1‑44 (MQ=255)                                                                                                                                          gCCGgtacgcccagcggagggcgtggcaggtcggtcaggtcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgccagtttggtcggccagcccaccagcaggcgctg  <  2:135405‑M1/149‑146 (MQ=255)                                                                                                                                             |                                                                                                                                                  CACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAG  >  NC_002947/5611980‑5612265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.